BS26531.complete Sequence
1229 bp assembled on 2011-08-26
GenBank Submission: KX803088
> BS26531.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACTCATACACCAACACAAACCTCATCCACAATCCCAACAACATCG
ACTTCGACACCAATGCCGACAACAACCCCCACTGCGACAACCCCCGCATC
CACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTA
GCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAA
CCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGA
TGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATA
AGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGT
CCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAAC
TGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATGAGG
ATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAACGAT
GGAGATATTACAGAGCGCGGACCGGGTGCAGGTGGCAGCAACGTGCACGA
ATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGGGCA
TCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGACGAT
CGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGG
CGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCATCG
TGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAGCCA
AAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCGCGA
GTTCTACGCCTGAAAGCTTTCTAGACCAT
BS26531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RD | 1197 | CG10497-PD | 1..1197 | 17..1213 | 5970 | 99.9 | Plus |
| Sdc-RA | 1200 | CG10497-PA | 1..1200 | 17..1213 | 5905 | 99.7 | Plus |
| Sdc-RJ | 1488 | CG10497-PJ | 632..1488 | 357..1213 | 4270 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RD | 1869 | CG10497-RD | 337..1533 | 17..1213 | 5970 | 99.9 | Plus |
| Sdc-RA | 2482 | CG10497-RA | 337..1536 | 17..1213 | 5905 | 99.7 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..1299 | 109..1213 | 5510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398580 | 872..357 | 2565 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21394563..21394736 | 1213..1040 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395045 | 1040..873 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 294..455 | 164 | 60.6 | Plus |
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 1207..1159 | 110 | 69.4 | Minus |
BS26531.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:29 Download gff for
BS26531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 336..1531 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:44 Download gff for
BS26531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 337..1532 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:57 Download gff for
BS26531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 337..1532 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:57 Download gff for
BS26531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394564..21394735 | 1041..1212 | 100 | <- | Minus |
| 2R | 21394878..21395045 | 873..1040 | 100 | <- | Minus |
| 2R | 21398065..21398580 | 357..872 | 99 | <- | Minus |
| 2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:44 Download gff for
BS26531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282069..17282240 | 1041..1212 | 100 | <- | Minus |
| arm_2R | 17282383..17282550 | 873..1040 | 100 | <- | Minus |
| arm_2R | 17285570..17286085 | 357..872 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BS26531.pep Sequence
Translation from 16 to 1212
> BS26531.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTAA
ATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDAD
AEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPT
TDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPNT
NVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVVG
LLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
BS26531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-PD | 398 | CG10497-PD | 1..398 | 1..398 | 2092 | 100 | Plus |
| Sdc-PA | 399 | CG10497-PA | 1..399 | 1..398 | 2080 | 99.7 | Plus |
| Sdc-PI | 494 | CG10497-PI | 1..494 | 1..398 | 1541 | 66.2 | Plus |
| Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..398 | 1527 | 66.3 | Plus |
| Sdc-PH | 266 | CG10497-PH | 1..266 | 133..398 | 1411 | 100 | Plus |
