BS26534.complete Sequence
1166 bp assembled on 2011-08-29
GenBank Submission: KX804743
> BS26534.complete
GAAGTTATCAGTCGACATGGCTGCTAGATTCATACAGAAAATTCTCAATC
AACTGGGTTTGATTGCAGCGCGTGATGCTCCGGCGGTGACTGCGACGCCA
GCAGTGAGCCAGGTCAACGCGACTCCCGCCGCCAGCCGGTCCTACTCCTC
CGGCACCAAGAAAGTCACCCTCATCCCTGGCGATGGCATCGGACCTGAGA
TCTCTGCGGCCGTGCAGAAAATCTTCACCGCCGCCAATGTCCCCATCGAG
TGGGAGGCCGTGGACGTGACCCCCGTCCGGGGACCCGACGGAAAGTTCGG
CATCCCACAGGCCGCCATTGACTCGGTGAACACGAACAAGATCGGCCTGA
AGGGTCCTCTGATGACGCCCGTCGGCAAGGGCCATCGGTCTCTGAATCTG
GCCCTGCGCAAGGAGTTCAATCTGTACGCCAACGTGCGTCCCTGCCGCAG
TCTCGAGGGCTACAAGACGCTGTACGACGATGTGGACGTGGTCACCATCC
GTGAGAACACCGAGGGCGAGTACTCCGGCATCGAGCACGAGATCGTCGAC
GGCGTCGTTCAGAGCATCAAGCTGATCACCGAGGAAGCCTCCAAGCGTGT
GGCCGAGTACGCCTTCCAGTACGCCAAGAACAACAACCGCAAGAAGGTCA
CCGTGGTGCACAAGGCGAACATTATGCGCATGTCCGATGGTCTCTTCCTG
CGCTGCGTCCGCGACATGGCCCAGAAGTTCCCAGAAATCCAGTTCGAAGA
GAAGTATCTGGATACGGTGTGCCTGAACATGGTCCAGAACCCCGGAAAAT
ACGACGTGCTGGTCATGCCCAATCTGTACGGTGATATTCTGTCTGACATG
TGCGCCGGTTTGGTGGGCGGCCTCGGCCTGACGCCCTCCGGCAACATGGG
CCTGAACGGTGCCCTGTTCGAGTCTGTGCACGGAACCGCCCCCGATATTG
CCGGCAAGGACCTGGCCAATCCCACTGCCCTGTTGCTGTCGGCGGTCATG
ATGCTGCGCCACATGGAGCTCAACACGTACGCCGATAAAATCGAGCGTGC
CGCCTTCGAGACCATCAAGGAGGGCAAATACCTCACCGGCGATCTGGGCG
GCCGTGCCAAGTGCTCCGAGTTCACGAACGAGATCTGTGCCAAGCTGTAG
AAGCTTTCTAGACCAT
BS26534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0156-RD | 1134 | CG12233-PD | 1..1134 | 17..1150 | 5670 | 100 | Plus |
| l(1)G0156-RC | 1065 | CG12233-PC | 28..1065 | 113..1150 | 5190 | 100 | Plus |
| l(1)G0156-RA | 1065 | CG12233-PA | 28..1065 | 113..1150 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0156-RD | 1395 | CG12233-RD | 106..1240 | 17..1151 | 5675 | 100 | Plus |
| l(1)G0156-RC | 2029 | CG12233-RC | 133..1171 | 113..1151 | 5195 | 100 | Plus |
| l(1)G0156-RA | 1332 | CG12233-RA | 139..1177 | 113..1151 | 5195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19519903..19520299 | 676..280 | 1985 | 100 | Minus |
| X | 23542271 | X | 19519286..19519626 | 1151..811 | 1705 | 100 | Minus |
| X | 23542271 | X | 19520659..19520831 | 281..109 | 865 | 100 | Minus |
| X | 23542271 | X | 19519694..19519831 | 813..676 | 690 | 100 | Minus |
| X | 23542271 | X | 19521326..19521396 | 114..44 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 8837967..8838119 | 473..625 | 330 | 81 | Plus |
| 3L | 28110227 | 3L | 8838311..8838526 | 799..1014 | 285 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:25 has no hits.
BS26534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:25:29 Download gff for
BS26534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RB | 112..1245 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:07 Download gff for
BS26534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 106..1239 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:12 Download gff for
BS26534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 106..1239 | 17..1150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:12 Download gff for
BS26534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19519696..19519831 | 676..811 | 100 | <- | Minus |
| X | 19519287..19519625 | 812..1150 | 100 | <- | Minus |
| X | 19519904..19520298 | 281..675 | 100 | <- | Minus |
| X | 19520660..19520827 | 113..280 | 100 | <- | Minus |
| X | 19521328..19521396 | 44..112 | 100 | <- | Minus |
| X | 19521673..19521699 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:07 Download gff for
BS26534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19413320..19413658 | 812..1150 | 100 | <- | Minus |
| arm_X | 19413729..19413864 | 676..811 | 100 | <- | Minus |
| arm_X | 19413937..19414331 | 281..675 | 100 | <- | Minus |
| arm_X | 19414693..19414860 | 113..280 | 100 | <- | Minus |
| arm_X | 19415361..19415429 | 44..112 | 100 | <- | Minus |
| arm_X | 19415706..19415732 | 17..43 | 100 | | Minus |
BS26534.pep Sequence
Translation from 16 to 1149
> BS26534.pep
MAARFIQKILNQLGLIAARDAPAVTATPAVSQVNATPAASRSYSSGTKKV
TLIPGDGIGPEISAAVQKIFTAANVPIEWEAVDVTPVRGPDGKFGIPQAA
IDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFNLYANVRPCRSLEGYK
TLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAF
QYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLDT
VCLNMVQNPGKYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNMGLNGAL
FESVHGTAPDIAGKDLANPTALLLSAVMMLRHMELNTYADKIERAAFETI
KEGKYLTGDLGGRAKCSEFTNEICAKL*
BS26534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0156-PD | 377 | CG12233-PD | 1..377 | 1..377 | 1930 | 100 | Plus |
| l(1)G0156-PC | 354 | CG12233-PC | 1..354 | 1..377 | 1787 | 93.9 | Plus |
| l(1)G0156-PA | 354 | CG12233-PA | 1..354 | 1..377 | 1787 | 93.9 | Plus |
| CG32026-PA | 719 | CG32026-PA | 353..718 | 18..377 | 1146 | 61.7 | Plus |
| CG6439-PB | 370 | CG6439-PB | 25..365 | 35..373 | 726 | 42.9 | Plus |
