BS26538.complete Sequence
1199 bp assembled on 2011-08-26
GenBank Submission: KX805584
> BS26538.complete
GAAGTTATCAGTCGACATGCTGGCACTGCCTTTGCTGACTCTGGCGGTCC
TCGCCAGCTGCGGCTACTCCGTGGACGCCTACTCCAAGTACGGCCGTGGA
TGCGGGGACATTGGCTGCCTGCCCACCGAGGAGTGCGTCATCACCAGCGA
CTCGTGCAGCTACAACCAGCGTGACGGCAAGGATTGCGGCAACTATCCCA
CCTGCAAACGGCGCTCCGGCGGAGGATCATCCGCCTCGAACAGCAGCCCC
AACTTGGCAGCCCCCTCGGCCAATCCGTCAGAGGTGAGCCATAACGCATA
CGCCCCGAATGCCCCAAGTGCCCCGAGTGCCCCGTTGCCGGAAGCGGATG
CGAGCGGTGGTGCTGGCTACGGTGGTGCTGCGGGCGGTGGTGGAAGCGGC
GGATATGGTGGTGGTTTCTCGGCTGGCGGCCACTCCCTGTACCCCAGCCT
ACCCAACTCAAACGGCGGCGGCGGTGGTGCGGCTCCCTACAATCCATATG
GCAGTGGTGGCGGCAACGGTGGATACGGCGGCTACAATCCCTACAACGGC
GGCTACCAGCCACCATCTTCTGGCGGCTATCAACCTCAAGCTCCTGGCGG
ATACCAACCCAGACCGGGCTACACGCCACCCGCCCCAGGCTACGATAACA
ACGGTGGTGGTGGTGCCCAGAAACCCAAGGACAAAGAGGGCGGCTTCTTC
TCCAATTTCTTCTCGAATCCGGCGGTGAGTCAAGCGGTGTCCGGTATCAT
TGCAGGCCAGATAGCCAAGCAACTGCAAGGCGGCGGAGCCGGAGGACCAG
GTGGTGGACAGCCGGCTGGCGGCTACCAGCCAAGCGGTGGCTATGGCGGA
GGACCAGCAGCAGGAGGCGGCGGATCCGGTGGTAGTAACATACTTGGCGG
TCTCTTGGGATCCGTTCTATCCGGCGGCGGTGGTGGTAATGCAGGCGCTG
GCGGCGGTAGTGCTAGCAGCTTCCTGGGGAGTCTGCTCAGCGGTGGAAAT
TCCAACAGAGGCGCTCAGCAAGGAGGCGGAGGTTCTGGAGGACTGGGCGA
CATCTTCAGCTCGAAAAACTTTGGCGGCCTCTTCAGTGAGAATCCCTCAT
CCAGGAGCGGCAGTCCCTCATCCTCCTCCGACGGAGGAGCCAAGGGCTAT
CCCACCCAGGCACCGGGCAACTATTATGGCTAAAAGCTTTCTAGACCAT
BS26538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32521-RD | 1167 | CG32521-PD | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| CG32521-RB | 1167 | CG32521-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| CG32521-RA | 1167 | CG32521-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32521-RD | 1691 | CG32521-RD | 152..1318 | 17..1183 | 5835 | 100 | Plus |
| CG32521-RB | 1782 | CG32521-RB | 243..1409 | 17..1183 | 5835 | 100 | Plus |
| CG32521-RA | 1714 | CG32521-RA | 175..1341 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21205683..21206587 | 1183..279 | 4525 | 100 | Minus |
| X | 23542271 | X | 21211080..21211274 | 281..87 | 975 | 100 | Minus |
| X | 23542271 | X | 21211687..21211756 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:23:28 has no hits.
BS26538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:31 Download gff for
BS26538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RB | 243..1407 | 17..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:28 Download gff for
BS26538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RA | 175..1339 | 17..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:34 Download gff for
BS26538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RA | 175..1339 | 17..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:34 Download gff for
BS26538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21205685..21206584 | 282..1181 | 100 | <- | Minus |
| X | 21211080..21211274 | 87..281 | 100 | <- | Minus |
| X | 21211687..21211756 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:28 Download gff for
BS26538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21076712..21077611 | 282..1181 | 100 | <- | Minus |
| arm_X | 21082107..21082301 | 87..281 | 100 | <- | Minus |
| arm_X | 21082714..21082783 | 17..86 | 100 | | Minus |
BS26538.pep Sequence
Translation from 16 to 1182
> BS26538.pep
MLALPLLTLAVLASCGYSVDAYSKYGRGCGDIGCLPTEECVITSDSCSYN
QRDGKDCGNYPTCKRRSGGGSSASNSSPNLAAPSANPSEVSHNAYAPNAP
SAPSAPLPEADASGGAGYGGAAGGGGSGGYGGGFSAGGHSLYPSLPNSNG
GGGGAAPYNPYGSGGGNGGYGGYNPYNGGYQPPSSGGYQPQAPGGYQPRP
GYTPPAPGYDNNGGGGAQKPKDKEGGFFSNFFSNPAVSQAVSGIIAGQIA
KQLQGGGAGGPGGGQPAGGYQPSGGYGGGPAAGGGGSGGSNILGGLLGSV
LSGGGGGNAGAGGGSASSFLGSLLSGGNSNRGAQQGGGGSGGLGDIFSSK
NFGGLFSENPSSRSGSPSSSSDGGAKGYPTQAPGNYYG*
BS26538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32521-PD | 388 | CG32521-PD | 1..388 | 1..388 | 2116 | 100 | Plus |
| CG32521-PB | 388 | CG32521-PB | 1..388 | 1..388 | 2116 | 100 | Plus |
| CG32521-PA | 388 | CG32521-PA | 1..388 | 1..388 | 2116 | 100 | Plus |
| CG32521-PI | 323 | CG32521-PI | 23..323 | 88..388 | 1641 | 99.7 | Plus |
| CG32521-PG | 230 | CG32521-PG | 53..230 | 210..388 | 765 | 84.9 | Plus |
