BS26540.complete Sequence
3554 bp assembled on 2011-09-19
GenBank Submission: KX803589
> BS26540.complete
GAAGTTATCAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATC
ATGGGGGCAGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGC
TCGCAACGCGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCC
ACACACACATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAAC
AGCAACAGGGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGG
CTGGGCAACAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGG
CAACAACAATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACA
TCAGCAGCAACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCA
AATTGCGATGTACAAACAAGTAATTCTAGCGGAACTTGTATTTATAACAA
TAGCAAAGCGCATCATCATCACAACAACAGCAACAACAATGGTCACACTC
AGAGCCACATTCACACTAATCATTCCCTCCACCAAGGTCACCATCACCCC
CACCACACCCAAATGCACACACCCCACTACCCGCATTCGAGTTCACCACA
GCAGTCAAACAGTTACCGCCAATACCCACCGCATTCCTACTCCCCCAACT
CCCCACACAGCAACGGCCATACAAACAGCAATGCTAGCAATAATCCCATT
AGTCAGCGTAGTAATCCCCAAGCCCACCCCAACCAGAACCAAAATTCCAA
TTTTTACGAGATGTGTACGGGAAGTGGGGGATCCCACACCTATGGATCCA
TGTCCGTTTCCCTGGTGAGACTGAATCCTGCCCGTTTGTGCCTAACGCTT
GGCCCTGTCACGCCGCCCGCCCAGCGAGTAGTATCCTTTGGCCACAGATC
CCATTCCCATTCCAATTCCAGTTCCAACACCAGTTCTAGTGATCAGAATC
AGCATAACCCGCCGCCACGTAGTCAAAACCATCACCCCAATCCACATCAT
AGTCAGTACCAGTACCAATACCAGTACCAATACCGATACCAGTACCATCC
GCCACACCAGTACCATCCATTGCATAGCCCACAGCAACAGACTAATCGCC
AATCCCTTCCGCTAACACGAACGAATTCAAATTCAATCAACGCAACAACT
TTCAATTCAACCAATCCAACAACAAATAGTAATCCTACTGATGTTGTGAA
TGTAAATTCTTGTACCGATATAATTCCTTATGGGTCTTCGTCAACGTCTT
CGTCTGCGTCTTCGATGCTGCCCCAACAACAACAACATCAAATTAATAAC
GCATCCGCACCCATCAATAGCCACAGCCAAGGTCAGGGACCCGGAAATTC
CCCCAATCTTGGCCACAATCACCAACGTGGCTACAACAACGGGAATAACA
ATCGGGGTATCGGGAACGGGATCGTAAATGGTAATACCAATGGACCACCC
GATTATATGAACTACCGACGTGGCGTGTGTCCGGCTCAATCGCGGGACTA
TTCCGGCAACGGAAATGGAAATAACAACGGACATGGCCACAATGGACGTC
GGTATATGTCCGATAACTTGAACAACCCGTCCTCATCCATGAATGGCCTG
ATCAATTCCGGACACCACCAGCGCAACTACAACGACAGGAACTTGAATAA
CCACTTTGGAAACTCCGAACAGAACGGAGGACCCGACCATCGGGATCGAG
CTGAGGGTTCTTCGTACAACTTTATGCGCAACGGAGGAGGTAGCGGGGGC
GGTGGCTACGGACGCAATGGATCGCATTACCAGCACATGGCCTATGGTAA
TAACAACGGTGCGTCCACTTCGACCGGCGGACCAGGACTTATGGGTGAAC
TGCCCTCGGGTTCGGGCCTGTCGGGCTCTTCGCTGTCGCTGAACAACGGA
CCCGGAGGCCTCAACTCCGACAGTCCGTCGCGTAAGCGCCGCCGCATCTC
CGGAAGACCCCCGAACGGACCACAGCCCCAACACCGTTGTCCGATGGCAC
ACATGCAGCAGGGAAGTCCGCCACTTAGACGCCCGCGGTTGCGCGATGTG
GCTACCTCCACGCAGCAGCAGCAACAGCAGTACGGCCATCAGGTTCATCA
TCCTCAGCAGCAGCAACAGCAGCCGCCATCCAACTATCACCCGATGCACC
ATCATCAGCCACAACCGCACTACGTTCCTCAGCAGCAGGTGCCACCGCCG
CACGTCCAGCGTTCACCGTGGGATTTGGGCAGCAGTGGAGGAAGCTCGGG
AGGAGCCACCTCCAGCAGCTCGGTGGGTCCCATTCTGCAGCAGGTGCAGG
CGCCGCCGCAGCCACCGAGTCACCAGCAAGCGGTTGGCTATCCACAAGCA
CCGCCACAGCCCGCCTCCCTGATGGTGGACCTCAATCTGAACCAGGTGCC
AGTGAACCTGCAGTTGCGTCCCTCGGAGCCCTTCTGGGCCTCCTTCTGCA
CCTATCCTATACCGGCGCAGGCTAGACTAGCACCCTGTCACTTGCACGGT
GTCTACACGCAGCCATTCCCCGCCGCCCCACCACCAGGACTGGCCGCTCC
TCCACTTCAACAACAGCATCAGCCACTTATTCAGGCCCAGCAAATGATTT
CCCAGGCCACCTTGACCGCCCAGCAGCAGCAGCGGGATGTGGTGGCCATT
GCAACGGCCAATCTGGGACCCATTGAAGCGCCGGGTGCCCATGGCCATCC
TCACGCCCATCCTCATGCTCATCCGCATGCCCACCAGCTGCCGCCGGGCA
TCCATATCACGCCGCTGAGCGGAGCGGCGGCAGCGGCCGCCACCCATCAT
CTACATTCCACGGCGGCAGCTGCAGCGGCCGTCGCTGCCGGCGCCCAGAT
AACCACCGCGCAGCAGATCCTCTTCTCATCGGACCGCCGCACATTCCCGC
CCCACCGCCGCATACCGCGTTTCTGGACGGCGAACCATGGACATCGTCAC
GTCCTGCCGCCGCAGTCGCTCGCCGCCCACCAAGCTCCTGTCCAGATTCA
GGCTACGTCGGGCATCATCAACCCTGGCTTCTTGCTCAATTTCCTGGCCA
TGTTCCCGCTGTCGCCTTATAACCAACATGATCTGAGCTCTGGCGACACC
AATGAGACGGAGAACTACGAGGCGCTGCTCAGCCTGGCCGAGCGATTGGG
TGAGGCCAAGCCGAGGGGACTCACCCGCAATGAGATCGATCAGTTGCCCA
GCTACAAGTTCAACCCGGAGGTGCACAACGGCGACCAATCATCCTGTGTG
GTGTGCATGTGTGACTTTGAGCTACGTCAGCTACTGCGCGTCCTGCCCTG
TTCCCATGAATTCCACGCCAAGTGCGTGGACAAATGGCTGCGATCGAATC
GCACCTGCCCAATTTGCCGCGGCAATGCCTCCGACTACTTCGACGGCGTC
GACCAGCAGCAACAGTCGCAGGCAACAGCCGGAGCTGCGGCTGCATTGAG
CGGCACGTCCGGCGGAAGTGCCGGAGTGGCGGGAACTTCCGAGGCTTCAG
CGGCCACCGCCAATCCACAGCAGAGCCAAGCGGCCTAGAAGCTTTCTAGA
CCAT
BS26540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-RC | 3522 | CG9381-PC | 1..3522 | 17..3538 | 17610 | 100 | Plus |
| mura-RB | 2607 | CG9381-PB | 385..2607 | 1316..3538 | 11100 | 100 | Plus |
| mura-RA | 2607 | CG9381-PA | 385..2607 | 1316..3538 | 11100 | 100 | Plus |
| mura-RB | 2607 | CG9381-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-RC | 4671 | CG9381-RC | 207..3730 | 16..3539 | 17620 | 100 | Plus |
| mura-RB | 3807 | CG9381-RB | 643..2866 | 1316..3539 | 11105 | 100 | Plus |
| mura-RA | 6303 | CG9381-RA | 610..2833 | 1316..3539 | 11105 | 100 | Plus |
| mura-RB | 3807 | CG9381-RB | 258..648 | 16..406 | 1955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9541679..9542925 | 1651..405 | 6235 | 100 | Minus |
| 3R | 32079331 | 3R | 9540584..9541166 | 2585..2003 | 2915 | 100 | Minus |
| 3R | 32079331 | 3R | 9540067..9540528 | 3046..2585 | 2310 | 100 | Minus |
| 3R | 32079331 | 3R | 9546798..9547187 | 405..16 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 9541229..9541579 | 2002..1652 | 1755 | 100 | Minus |
| 3R | 32079331 | 3R | 9539095..9539290 | 3539..3344 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 9539818..9540003 | 3231..3046 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 9539363..9539476 | 3343..3230 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2700 | 320..722 | 217 | 55 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 620..736 | 2654..2541 | 118 | 58.1 | Minus |
BS26540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:03 Download gff for
BS26540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 208..3729 | 17..3538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:40 Download gff for
BS26540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 208..3729 | 17..3538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:01 Download gff for
BS26540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 208..3729 | 17..3538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:01 Download gff for
BS26540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9539096..9539290 | 3344..3538 | 100 | <- | Minus |
| 3R | 9539363..9539475 | 3231..3343 | 100 | <- | Minus |
| 3R | 9539819..9540003 | 3046..3230 | 100 | <- | Minus |
| 3R | 9540068..9540527 | 2586..3045 | 100 | <- | Minus |
| 3R | 9540584..9541166 | 2003..2585 | 100 | <- | Minus |
| 3R | 9541229..9541579 | 1652..2002 | 100 | <- | Minus |
| 3R | 9541679..9542924 | 406..1651 | 100 | <- | Minus |
| 3R | 9546798..9547186 | 17..405 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:40 Download gff for
BS26540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5364818..5365012 | 3344..3538 | 100 | <- | Minus |
| arm_3R | 5365085..5365197 | 3231..3343 | 100 | <- | Minus |
| arm_3R | 5365541..5365725 | 3046..3230 | 100 | <- | Minus |
| arm_3R | 5365790..5366249 | 2586..3045 | 100 | <- | Minus |
| arm_3R | 5366306..5366888 | 2003..2585 | 100 | <- | Minus |
| arm_3R | 5366951..5367301 | 1652..2002 | 100 | <- | Minus |
| arm_3R | 5367401..5368646 | 406..1651 | 100 | <- | Minus |
| arm_3R | 5372520..5372908 | 17..405 | 100 | | Minus |
BS26540.pep Sequence
Translation from 16 to 3537
> BS26540.pep
MLNSNATGGNNHGGSSRRPFTRNSSSVRSQRGGGGGLGGRMVYSPHTHPH
VQQQQQQQQQQQQQGQQRSSNNGNNNLWLGNSPWCNVNLNGGNSGNNNNN
GGNNNNNNGGNISSNNNSNNVNNKDANPNCDVQTSNSSGTCIYNNSKAHH
HHNNSNNNGHTQSHIHTNHSLHQGHHHPHHTQMHTPHYPHSSSPQQSNSY
RQYPPHSYSPNSPHSNGHTNSNASNNPISQRSNPQAHPNQNQNSNFYEMC
TGSGGSHTYGSMSVSLVRLNPARLCLTLGPVTPPAQRVVSFGHRSHSHSN
SSSNTSSSDQNQHNPPPRSQNHHPNPHHSQYQYQYQYQYRYQYHPPHQYH
PLHSPQQQTNRQSLPLTRTNSNSINATTFNSTNPTTNSNPTDVVNVNSCT
DIIPYGSSSTSSSASSMLPQQQQHQINNASAPINSHSQGQGPGNSPNLGH
NHQRGYNNGNNNRGIGNGIVNGNTNGPPDYMNYRRGVCPAQSRDYSGNGN
GNNNGHGHNGRRYMSDNLNNPSSSMNGLINSGHHQRNYNDRNLNNHFGNS
EQNGGPDHRDRAEGSSYNFMRNGGGSGGGGYGRNGSHYQHMAYGNNNGAS
TSTGGPGLMGELPSGSGLSGSSLSLNNGPGGLNSDSPSRKRRRISGRPPN
GPQPQHRCPMAHMQQGSPPLRRPRLRDVATSTQQQQQQYGHQVHHPQQQQ
QQPPSNYHPMHHHQPQPHYVPQQQVPPPHVQRSPWDLGSSGGSSGGATSS
SSVGPILQQVQAPPQPPSHQQAVGYPQAPPQPASLMVDLNLNQVPVNLQL
RPSEPFWASFCTYPIPAQARLAPCHLHGVYTQPFPAAPPPGLAAPPLQQQ
HQPLIQAQQMISQATLTAQQQQRDVVAIATANLGPIEAPGAHGHPHAHPH
AHPHAHQLPPGIHITPLSGAAAAAATHHLHSTAAAAAAVAAGAQITTAQQ
ILFSSDRRTFPPHRRIPRFWTANHGHRHVLPPQSLAAHQAPVQIQATSGI
INPGFLLNFLAMFPLSPYNQHDLSSGDTNETENYEALLSLAERLGEAKPR
GLTRNEIDQLPSYKFNPEVHNGDQSSCVVCMCDFELRQLLRVLPCSHEFH
AKCVDKWLRSNRTCPICRGNASDYFDGVDQQQQSQATAGAAAALSGTSGG
SAGVAGTSEASAATANPQQSQAA*
BS26540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-PC | 1173 | CG9381-PC | 1..1173 | 1..1173 | 6463 | 100 | Plus |
| mura-PB | 868 | CG9381-PB | 43..868 | 344..1173 | 4088 | 91.1 | Plus |
| mura-PA | 868 | CG9381-PA | 43..868 | 344..1173 | 4088 | 91.1 | Plus |
| mura-PB | 868 | CG9381-PB | 1..474 | 1..446 | 799 | 41.6 | Plus |
| mura-PA | 868 | CG9381-PA | 1..474 | 1..446 | 799 | 41.6 | Plus |
| tlk-PB | 1463 | CG34412-PB | 44..765 | 52..785 | 236 | 23.6 | Plus |
| CG15040-PA | 1895 | CG15040-PA | 1468..1880 | 71..503 | 234 | 21 | Plus |
| tlk-PB | 1463 | CG34412-PB | 90..414 | 20..306 | 188 | 25.7 | Plus |
