BS26542.complete Sequence
1850 bp assembled on 2011-09-19
GenBank Submission: KX800487
> BS26542.complete
GAAGTTATCAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTG
TTAATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAAT
GTGGTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGA
ATCGGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATT
CCAAGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGAC
AAGCTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGC
GGAGCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGG
AAAACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGGGAACTGG
TTCATCCAAGTGCCCATCACCAATCCAGAACTGGCCACATTCGAGCACCG
AAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGGAATCGAATGACCCGT
GGAACTGGTGGAATAACCTGCGCATGGTCACCAAACACAGCACCAAAGTG
AAGGTTGTGATAGAGCTAAACGATGCTGATCGACCCAGCAAGGAAACAGT
GCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCATCATTCCGTCTTCCC
TGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTGAAGAAGGAGTGGCAG
CTCATCGTCGGGCACTTCATCTCGGTACGGGCCAACATCATCATCTCCAC
AAATCCCAACGATAAGGCTTTGTGCCAGTACGCGGATTACGTAAATAAGC
TAATTAATGATAACTGCGATAAGCACATGCTAAACAGCTATGAAAACATG
CTGGAAATTCCACTGCAGCCTCTTTGCGATAATCTGGACACCTATACCTA
TGAGGTATTCGAAACTGATCCTGTCAAATACAAACTCTATCAGGATGCCG
TACAAGCGGCCCTGTTGGATCGAGTAAGCGCTGCGGAGGCTAAAACGAAA
CTGACAGTTGTAATGCTACTGGGTGGAGGACGAGGTCCTTTAGCGAGAGC
TGTTTTCAATGCTGCCGAGTTAACGAAGCGCAAAGTTCGCCTCTACATCA
TAGAAAAGAATCCCAATGCCATCCGCACCCTCTCCAACATGGTTAAAACG
CTTTGGGCCGATAAGGATGTTCACATTTTTTCAAAGGACATGCGGGACTT
TTCCCCTCCAGAGCTGGCTGACATCATGGTTTCGGAGTTACTTGGTTCCT
TTGGCGATAATGAACTTTCGCCCGAGTGCCTTGATGGAGCACTGAAGCTG
CTCAAACCGGATGGAATCAGTATACCCTACAAATCCACCTCCTACATTAA
TCCACTGATGTCAGCAGTGCTGCACCAAAATGTCTGCCAATTGTTACCAA
CCTATCCTGCCTTCGACTACGGCTATGTGTCGCTGCTAAAGAATATTTAC
CATATTGACGAGCCGCAGGCTCTGTTTGAATTCGTACATCCTAATCGAGC
GGAAAATATTGACAATACTCGCTGCAAGACGGTTTCATTTAAAGTCAATA
AAGATTGCGTGCTGCACGGAATCGGCGGATACTTTGATACCCATTTGTAC
AAGGACATCTGCCTAAGCATCAATCCTCTGACCCATACGCCTGGCATGTT
CTCCTGGTTCCCCATGTTCTTCGCAACGCGTCCAAGAACTCTGAGGGAGG
GACAGACTATATCCATCCAGTTTTGGCGATGCGTGGATGCAACCAAAGTG
TGGTACGAATGGCAGGTGGTCAATTCTCCAGACGATTGGGAGCACCATAA
CACACGCGGGACAGGTTACAACATGCGATTGTAAAAGCTTTCTAGACCAT
BS26542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1818 | CG3730-PB | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| csul-RA | 1833 | CG3730-PA | 1..1833 | 17..1834 | 8905 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1998 | CG3730-RB | 96..1917 | 17..1838 | 9095 | 99.9 | Plus |
| csul-RA | 2013 | CG3730-RA | 96..1932 | 17..1838 | 8910 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16266141..16266653 | 1166..1678 | 2565 | 100 | Plus |
| 2R | 25286936 | 2R | 16265181..16265626 | 392..837 | 2230 | 100 | Plus |
| 2R | 25286936 | 2R | 16264747..16265123 | 17..393 | 1885 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265853 | 836..1003 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 16265913..16266076 | 1003..1166 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 16266718..16266878 | 1678..1838 | 790 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:01:56 has no hits.
BS26542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:04 Download gff for
BS26542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 73..1888 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:59 Download gff for
BS26542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1911 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:09 Download gff for
BS26542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1911 | 17..1832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:09 Download gff for
BS26542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16264747..16265122 | 17..392 | 100 | -> | Plus |
| 2R | 16265182..16265626 | 393..837 | 100 | -> | Plus |
| 2R | 16265688..16265853 | 838..1003 | 100 | -> | Plus |
| 2R | 16265914..16266076 | 1004..1166 | 100 | -> | Plus |
| 2R | 16266142..16266653 | 1167..1678 | 100 | -> | Plus |
| 2R | 16266719..16266872 | 1679..1832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:59 Download gff for
BS26542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12154224..12154377 | 1679..1832 | 100 | | Plus |
| arm_2R | 12152252..12152627 | 17..392 | 100 | -> | Plus |
| arm_2R | 12152687..12153131 | 393..837 | 100 | -> | Plus |
| arm_2R | 12153193..12153358 | 838..1003 | 100 | -> | Plus |
| arm_2R | 12153419..12153581 | 1004..1166 | 100 | -> | Plus |
| arm_2R | 12153647..12154158 | 1167..1678 | 100 | -> | Plus |
BS26542.pep Sequence
Translation from 16 to 1833
> BS26542.pep
MNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPTY
PATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQN
VGNLMVRLRGPENENLASIVLAKTKGNWFIQVPITNPELATFEHRKDATA
EEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETVRRWLG
EPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIISTNPNDK
ALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTYEVFET
DPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARAVFNAA
ELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDFSPPEL
ADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYINPLMSA
VLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRAENIDN
TRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMFSWFPM
FFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHNTRGTG
YNMRL*
BS26542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-PB | 605 | CG3730-PB | 1..605 | 1..605 | 3235 | 100 | Plus |
| csul-PA | 610 | CG3730-PA | 1..610 | 1..605 | 3219 | 99.2 | Plus |
