BS26543.complete Sequence
1424 bp assembled on 2011-08-26
GenBank Submission: KX805047
> BS26543.complete
GAAGTTATCAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTG
GCCCACAAACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCC
ACCACAGCCCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCAC
CCGCCAATCTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATT
TTCGTGTCGGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTA
GGCAAAAACCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTAT
GAAGTCAAAGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTAT
TAGGATCACATGCAGAGGGTGTACCAGAAGTATATTACTTCGGCCCATGC
GGCAAATACAATGCTCTTGTTATGGAGTTGCTTGGTCCATCACTTGAAGA
TTTATTCGATATTTGCGGCAGACGTTTCACTTTGAAGAGCGTACTTCTGA
TAGCTATACAATTACTCCACCGGATCGAATATGTTCATAGTCGGCACTTA
ATATATAGGGATGTGAAACCAGAGAACTTTCTCATTGGCAGAACGTCAAC
AAAACGTGAAAAAATTATACATATAATTGATTTCGGTTTGGCCAAAGAAT
ACATTGATTTAGATACAAATAGGCATATACCATATCGGGAGCATAAATCC
CTAACTGGAACGGCACGTTATATGTCAATCAACACGCACATGGGGCGTGA
GCAGTCGCGACGCGATGATCTGGAGGCATTGGGGCATATGTTTATGTATT
TCTTAAGGGGTTCACTGCCGTGGCAAGGCCTAAAGGCTGATACACTCAAG
GAGAGATATCAAAAAATCGGTGATACGAAACGAGCAACGCCCATCGAGGT
GCTTTGTGATGGACATCCGGAAGAGTTTGCGACATATTTGCGTTATGTAC
GGCGGTTAGATTTTTTCGAAACTCCCGACTATGATTTTCTGCGAAGACTG
TTTCAAGACTTATTCGATCGTAAGGGATACACCGACGAGGGCGAGTTCGA
CTGGACAGGGAAGACAATGTCAACGCCCGTCGGATCTCTGCAAACTGGCC
ATGAAGTCATCATTTCACCAAATAAAGATCGTCATAATGTTACGGCTAAG
ACAAATGCCAAAGGAGGTGTTGCTGCGTGGCCTGATGTGCCAAAGCCGGG
GGCAACACTGGGCAATCTAACGCCGGCCGATCGGCATGGTTCAGTACAGG
TTGTGAGTTCGACGAATGGCGAACTAAATCCGGACGATCCCACGGCCGGA
CACTCAAACACGCCCATCACACAGCAGCCGGAAGTCGAAGTGGTCGATGA
AACAAAATGTTGTTGTTTCTTTAAACGAAAGAAGAAGAAATCGACGCGCC
AAAAATGAAAGCTTTCTAGACCAT
BS26543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RE | 1392 | CG6963-PE | 1..1392 | 17..1408 | 6960 | 100 | Plus |
| gish-RA | 1269 | CG6963-PA | 1..1269 | 140..1408 | 6345 | 100 | Plus |
| gish-RM | 1407 | CG6963-PM | 497..1407 | 498..1408 | 4495 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RE | 3212 | CG6963-RE | 1319..2714 | 13..1408 | 6965 | 99.9 | Plus |
| gish-RA | 2677 | CG6963-RA | 464..1830 | 42..1408 | 6835 | 100 | Plus |
| gish-RM | 5623 | CG6963-RM | 1819..2729 | 498..1408 | 4495 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297107 | 629..901 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 41..252 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16297173..16297345 | 897..1069 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 16295668..16295820 | 362..514 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 515..629 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 250..362 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 16301242..16301351 | 1247..1356 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 16299589..16299691 | 1149..1251 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 16298469..16298550 | 1069..1150 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 16301823..16301874 | 1357..1408 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:28 has no hits.
BS26543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:31 Download gff for
BS26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1317..2700 | 17..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:32 Download gff for
BS26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1323..2706 | 17..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:33 Download gff for
BS26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1323..2706 | 17..1400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:33 Download gff for
BS26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16289631..16289839 | 43..251 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 252..362 | 100 | -> | Plus |
| 3R | 16295669..16295820 | 363..514 | 100 | -> | Plus |
| 3R | 16296662..16296776 | 515..629 | 100 | -> | Plus |
| 3R | 16275144..16275169 | 17..42 | 100 | -> | Plus |
| 3R | 16296836..16297104 | 630..898 | 100 | -> | Plus |
| 3R | 16297175..16297345 | 899..1069 | 100 | -> | Plus |
| 3R | 16298470..16298550 | 1070..1150 | 100 | -> | Plus |
| 3R | 16299591..16299689 | 1151..1249 | 100 | -> | Plus |
| 3R | 16301245..16301351 | 1250..1356 | 100 | -> | Plus |
| 3R | 16301823..16301866 | 1357..1400 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:32 Download gff for
BS26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12127545..12127588 | 1357..1400 | 100 | | Plus |
| arm_3R | 12100866..12100891 | 17..42 | 100 | -> | Plus |
| arm_3R | 12115353..12115561 | 43..251 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 252..362 | 100 | -> | Plus |
| arm_3R | 12121391..12121542 | 363..514 | 100 | -> | Plus |
| arm_3R | 12122384..12122498 | 515..629 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 630..898 | 100 | -> | Plus |
| arm_3R | 12122897..12123067 | 899..1069 | 100 | -> | Plus |
| arm_3R | 12124192..12124272 | 1070..1150 | 100 | -> | Plus |
| arm_3R | 12125313..12125411 | 1151..1249 | 100 | -> | Plus |
| arm_3R | 12126967..12127073 | 1250..1356 | 100 | -> | Plus |
BS26543.pep Sequence
Translation from 16 to 1407
> BS26543.pep
MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYSTRQSVS
TTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAP
QLHLEYRFYKLLGSHAEGVPEVYYFGPCGKYNALVMELLGPSLEDLFDIC
GRRFTLKSVLLIAIQLLHRIEYVHSRHLIYRDVKPENFLIGRTSTKREKI
IHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTARYMSINTHMGREQSRRD
DLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCDGH
PEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDWTGKT
MSTPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAAWPDVPKPGATLGN
LTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDETKCCC
FFKRKKKKSTRQK*
BS26543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-PE | 463 | CG6963-PE | 1..463 | 1..463 | 2461 | 100 | Plus |
| gish-PM | 468 | CG6963-PM | 1..468 | 1..463 | 2357 | 95.1 | Plus |
| gish-PL | 537 | CG6963-PL | 1..468 | 1..463 | 2357 | 95.1 | Plus |
| gish-PH | 468 | CG6963-PH | 1..468 | 1..463 | 2357 | 95.1 | Plus |
| gish-PD | 468 | CG6963-PD | 1..468 | 1..463 | 2357 | 95.1 | Plus |
