BS26544.complete Sequence
1568 bp assembled on 2011-09-19
GenBank Submission: KX806256
> BS26544.complete
GAAGTTATCAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCG
GCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAA
CGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGAC
CACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCG
CCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGG
AACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCT
TAAGTCGCCCAAGAACGAGCAGATCCGCAACATGTTGGATAAATTGGTGG
TCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCC
AAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGT
GCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGG
TACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGC
AAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTT
CCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATG
TCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTAC
GATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCG
CGAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATC
TGAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTG
GAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGG
TACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAG
TGCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTCAAGTTC
TTTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCGCGTTTT
GCGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGACGCTGG
AGAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCGGCCATG
AAGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCGTTTCTT
GCCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATTTATATA
CGCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTCCCTACC
ACGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAAGGAGTT
CCTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATCACTTGA
CCGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGCGGCACT
GTGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGCTGGAGC
CATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGGACCACT
AAAAGCTTTCTAGACCAT
BS26544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RD | 1536 | CG4347-PD | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| UGP-RC | 1542 | CG4347-PC | 1..1542 | 17..1552 | 7585 | 99.6 | Plus |
| UGP-RE | 1557 | CG4347-PE | 49..1557 | 44..1552 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RD | 2093 | CG4347-RD | 295..1831 | 17..1553 | 7685 | 100 | Plus |
| UGP-RC | 2099 | CG4347-RC | 295..1837 | 17..1553 | 7590 | 99.6 | Plus |
| UGP-RE | 2686 | CG4347-RE | 302..1811 | 44..1553 | 7550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 1445..1033 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9352882..9353230 | 669..321 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 896..670 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 230..42 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9352405..9352545 | 1034..894 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 9351742..9351850 | 1553..1445 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 322..229 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:36 has no hits.
BS26544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:05 Download gff for
BS26544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 291..1824 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:30 Download gff for
BS26544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 295..1828 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:49 Download gff for
BS26544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 295..1828 | 17..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:49 Download gff for
BS26544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351745..9351850 | 1445..1550 | 100 | <- | Minus |
| 3L | 9351918..9352327 | 1035..1444 | 100 | <- | Minus |
| 3L | 9352405..9352543 | 896..1034 | 100 | <- | Minus |
| 3L | 9352602..9352827 | 670..895 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 323..669 | 100 | <- | Minus |
| 3L | 9353738..9353829 | 231..322 | 100 | <- | Minus |
| 3L | 9353888..9354074 | 44..230 | 100 | <- | Minus |
| 3L | 9358615..9358641 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:30 Download gff for
BS26544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344845..9344950 | 1445..1550 | 100 | <- | Minus |
| arm_3L | 9346988..9347174 | 44..230 | 100 | <- | Minus |
| arm_3L | 9351715..9351741 | 17..43 | 100 | | Minus |
| arm_3L | 9346838..9346929 | 231..322 | 100 | <- | Minus |
| arm_3L | 9345018..9345427 | 1035..1444 | 100 | <- | Minus |
| arm_3L | 9345505..9345643 | 896..1034 | 100 | <- | Minus |
| arm_3L | 9345702..9345927 | 670..895 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 323..669 | 100 | <- | Minus |
BS26544.pep Sequence
Translation from 16 to 1551
> BS26544.pep
MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR
QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN
EQIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQIEH
LNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRISR
EHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYCFL
SNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTLIQM
ENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRERTL
NMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVKKS
SDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGRFA
NIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILENK
IVSGNMRILDH*
BS26544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-PD | 511 | CG4347-PD | 1..511 | 1..511 | 2643 | 100 | Plus |
| UGP-PC | 513 | CG4347-PC | 1..513 | 1..511 | 2630 | 99.6 | Plus |
| UGP-PE | 518 | CG4347-PE | 15..518 | 8..511 | 2597 | 99.8 | Plus |
| UGP-PA | 520 | CG4347-PA | 15..520 | 8..511 | 2584 | 99.4 | Plus |
