BS26545.complete Sequence
2891 bp assembled on 2011-09-19
GenBank Submission: KX804020
> BS26545.complete
GAAGTTATCAGTCGACATGGAGAGAGCTGAAGGGTGTGAAGTCGTCTCTC
CGATCGATCAATCGCGGGGTGGAAAGGAAAGCGAAGCTTCCGCAGACGAA
TCACTGTTGTTTTACTGCAAAAGCAAAGAGGCCGAAGTCAAACGCATAAA
CAAGGAGTTGGCCAATATACGAAGCAAATTTAAAGGAGACAAAACCCTCG
ACGGCTATCAGAAAAAGAAATATGTCTGTAAGCTATTATTCATATTTCTC
CTCGGCCATGACATCGACTTCGGGCACATGGAGGCGGTCAATTTGCTGTC
CTCCAACAAATACTCAGAAAAGCAGATTGGTTACCTTTTCATCTCAGTGT
TGGTGAACACCAACAGCGACCTTATTCGGCTGATCATCCAATCTATAAAG
AATGATTTGCAGTCGCGTAATCCTGTGCACGTTAATCTGGCACTACAATG
CATTGCCAACATTGGAAGTCGGGATATGGCCGAGTCCTTTTCCAACGAAA
TACCCAAGCTACTCGTCTCGGGCGACACCATGGACGTGGTGAAGCAGTCG
GCGGCGCTATGCCTGCTCCGCCTGTTCCGCTCCTCGCCGGACATCATTCC
CGGTGGTGAGTGGACTTCGCGCATTATCCATTTGCTCAATGATCAGCACA
TGGGAGTGGTCACAGCGGCCACCTCGCTGATCGACGCCTTGGTGAAGCGC
AATCCGGACGAGTACAAGGGTTGTGTTAATTTGGCTGTTTCACGCTTATC
CCGGATCGTAACAGCCAGCTACACGGATCTTCAGGATTACACATATTACT
TTGTGCCGGCTCCATGGCTATCGGTGAAACTTCTGCGATTGCTGCAAAAC
TACAATCCAGTGACCGAAGAGGCCGGTGTGCGGGCCCGCTTGAATGAAAC
TTTGGAGACGATTTTGAACAAGGCGCAAGAGCCGCCAAAGAGTAAGAAGG
TGCAGCACTCTAACGCAAAGAACGCCGTGCTCTTCGAGGCCATCAACCTG
ATCATTCACAGCGACAGCGAGCCGAACCTTCTTGTCCGCGCTTGCAACCA
GTTGGGACAGTTCCTTAGCAATCGGGAGACCAACTTGCGCTATCTGGCTC
TGGAGTCCATGTGCCACCTGGCCACATCGGAGTTCTCGCACGAGGAGGTG
AAGAAGCACCAGGAGGTGGTCATTTTGTCAATGAAAATGGAGAAGGACGT
GTCCGTGCGCCAAATGGCGGTGGATCTTTTGTATGCCATGTGTGATCGTG
GTAATGCCGAGGAAATTGTTCAGGAGATGCTCAACTATCTGGAGACGGCC
GACTACTCTATTCGTGAGGAAATGGTGCTCAAGGTGGCCATTCTTGCCGA
GAAGTACGCCACGGATTATACCTGGTATGTGGACGTTATCCTCAATCTAA
TTCGCATTGCTGGCGACTACGTGTCTGAGGAAGTATGGTACCGCGTCATT
CAGATCGTGATCAATCGCGAGGAGGTTCAAGGCTATGCCGCAAAGACTGT
TTTTGAGGCGCTACAGGCCCCTGCCTGCCACGAAAACATGGTTAAAGTGG
GCGGCTACATCTTGGGCGAGTTTGGCAACTTAATCGCCGGAGATTCCCGC
TCAGCACCACTGGTACAATTCAAGCTACTGCACTCCAAGTACCACTTGTG
CTCGCCGATGACCCGGGCCCTTCTTCTGTCCACGTACATTAAATTTATCA
ACCTCTTTCCGGAAATTCGTACCAATATCCAGGATGTGTTCCGCCAGCAC
AGCAATCTTCGATCCGCAGATGCGGAACTGCAGCAGCGAGCTAGCGAATA
TCTCCAGCTTAGCATAGTGGCATCGACAGACGTTTTGGCCACCGTCCTGG
AGGAGATGCCATCGTTCCCGGAACGCGAGAGCTCAATTTTAGCAGTGCTA
AAGAAGAAGAAGCCCGGCAGGGTGCCGGAGAACGAAATTCGCGAGTCGAA
GAGCCCGGCACCCCTGACTTCTGCAGCGCAGAACAACGCCCTTGTGAACA
ATTCACATAGCAAGCTGAATAACAGCAACGCAAATACGGATCTGCTTGGA
TTAAGCACTCCGCCATCAAATAATATTGGCAGTGGTAGCAATAGCAACAG
TACGCTCATTGATGTTTTGGGCGACATGTACGGCAGCAATAGTAACAACA
ACTCAAGTGCCGTGTACAACACGAAGAAGTTTTTGTTCAAGAACAATGGT
GTTTTGTTTGAGAACGAAATGCTGCAGATCGGTGTGAAGAGCGAGTTTCG
CCAGAATTTAGGACGATTAGGCCTTTTCTACGGCAACAAGACACAGGTTC
CCCTGACAAACTTCAATCCTGTGCTGCAATGGTCTGCCGAGGATGCGCTT
AAGCTGAACGTGCAGATGAAGGTGGTGGAGCCAACCCTGGAGGCCGGCGC
CCAGATCCAACAACTGTTAACCGCGGAATGCATCGAGGACTACGCCGATG
CGCCAACAATCGAGATCAGTTTCCGCTACAACGGCACCCAGCAGAAGTTC
AGCATTAAACTGCCATTGAGCGTTAACAAATTCTTTGAGCCTACCGAAAT
GAATGCGGAATCATTCTTTGCACGATGGAAGAACCTTAGCGGTGAACAAC
AACGGTCACAGAAAGTGTTCAAGGCTGCACAGCCACTGGATTTGCCCGGA
GCCCGCAACAAGCTTATGGGCTTTGGAATGCAACTGCTGGACCAAGTGGA
TCCCAATCCAGACAACATGGTCTGCGCGGGCATCATTCATACGCAATCGC
AACAGGTGGGCTGCCTTATGCGATTGGAGCCGAACAAGCAGGCTCAGATG
TTCCGACTGACAGTTCGGGCAAGCAAGGAGACCGTAACTCGGGAAATCTG
CGATCTGTTGACGGATCAATTCTAAAAGCTTTCTAGACCAT
BS26545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-2alpha-RB | 2859 | CG4260-PB | 1..2859 | 17..2875 | 14280 | 100 | Plus |
| AP-2alpha-RA | 2823 | CG4260-PA | 62..2823 | 114..2875 | 13795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-2alpha-RB | 3432 | CG4260-RB | 58..2920 | 13..2875 | 14300 | 100 | Plus |
| AP-2alpha-RA | 4711 | CG4260-RA | 592..3353 | 114..2875 | 13795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 410127..411066 | 2308..1369 | 4685 | 99.9 | Minus |
| 2L | 23513712 | 2L | 411122..411721 | 1381..782 | 2985 | 99.8 | Minus |
| 2L | 23513712 | 2L | 411781..412237 | 785..329 | 2285 | 100 | Minus |
| 2L | 23513712 | 2L | 409790..410073 | 2592..2309 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 412446..412658 | 329..117 | 1050 | 99.5 | Minus |
| 2L | 23513712 | 2L | 409532..409737 | 2797..2592 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 412724..412828 | 117..13 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 409388..409467 | 2875..2796 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:42 has no hits.
BS26545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:05 Download gff for
BS26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Adaptin-RB | 62..2918 | 17..2873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:51 Download gff for
BS26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2alpha-RB | 62..2918 | 17..2873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:45 Download gff for
BS26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2alpha-RB | 62..2918 | 17..2873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:45 Download gff for
BS26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 412447..412658 | 117..328 | 99 | <- | Minus |
| 2L | 412725..412824 | 17..116 | 100 | | Minus |
| 2L | 409390..409465 | 2798..2873 | 100 | <- | Minus |
| 2L | 409532..409736 | 2593..2797 | 100 | <- | Minus |
| 2L | 409790..410073 | 2309..2592 | 100 | <- | Minus |
| 2L | 410127..411060 | 1375..2308 | 100 | <- | Minus |
| 2L | 411129..411718 | 785..1374 | 100 | <- | Minus |
| 2L | 411782..412237 | 329..784 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:51 Download gff for
BS26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 409390..409465 | 2798..2873 | 100 | <- | Minus |
| arm_2L | 409532..409736 | 2593..2797 | 100 | <- | Minus |
| arm_2L | 409790..410073 | 2309..2592 | 100 | <- | Minus |
| arm_2L | 410127..411060 | 1375..2308 | 100 | <- | Minus |
| arm_2L | 411129..411718 | 785..1374 | 100 | <- | Minus |
| arm_2L | 411782..412237 | 329..784 | 100 | <- | Minus |
| arm_2L | 412447..412658 | 117..328 | 99 | <- | Minus |
| arm_2L | 412725..412824 | 17..116 | 100 | | Minus |
BS26545.pep Sequence
Translation from 16 to 2874
> BS26545.pep
MERAEGCEVVSPIDQSRGGKESEASADESLLFYCKSKEAEVKRINKELAN
IRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYS
EKQIGYLFISVLVNTNSDLIRLIIQSIKNDLQSRNPVHVNLALQCIANIG
SRDMAESFSNEIPKLLVSGDTMDVVKQSAALCLLRLFRSSPDIIPGGEWT
SRIIHLLNDQHMGVVTAATSLIDALVKRNPDEYKGCVNLAVSRLSRIVTA
SYTDLQDYTYYFVPAPWLSVKLLRLLQNYNPVTEEAGVRARLNETLETIL
NKAQEPPKSKKVQHSNAKNAVLFEAINLIIHSDSEPNLLVRACNQLGQFL
SNRETNLRYLALESMCHLATSEFSHEEVKKHQEVVILSMKMEKDVSVRQM
AVDLLYAMCDRGNAEEIVQEMLNYLETADYSIREEMVLKVAILAEKYATD
YTWYVDVILNLIRIAGDYVSEEVWYRVIQIVINREEVQGYAAKTVFEALQ
APACHENMVKVGGYILGEFGNLIAGDSRSAPLVQFKLLHSKYHLCSPMTR
ALLLSTYIKFINLFPEIRTNIQDVFRQHSNLRSADAELQQRASEYLQLSI
VASTDVLATVLEEMPSFPERESSILAVLKKKKPGRVPENEIRESKSPAPL
TSAAQNNALVNNSHSKLNNSNANTDLLGLSTPPSNNIGSGSNSNSTLIDV
LGDMYGSNSNNNSSAVYNTKKFLFKNNGVLFENEMLQIGVKSEFRQNLGR
LGLFYGNKTQVPLTNFNPVLQWSAEDALKLNVQMKVVEPTLEAGAQIQQL
LTAECIEDYADAPTIEISFRYNGTQQKFSIKLPLSVNKFFEPTEMNAESF
FARWKNLSGEQQRSQKVFKAAQPLDLPGARNKLMGFGMQLLDQVDPNPDN
MVCAGIIHTQSQQVGCLMRLEPNKQAQMFRLTVRASKETVTREICDLLTD
QF*
BS26545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-2alpha-PB | 952 | CG4260-PB | 1..952 | 1..952 | 4842 | 100 | Plus |
| AP-2alpha-PA | 940 | CG4260-PA | 22..940 | 34..952 | 4676 | 100 | Plus |
| AP-1gamma-PI | 963 | CG9113-PI | 55..711 | 44..716 | 535 | 27.8 | Plus |
| AP-1gamma-PF | 963 | CG9113-PF | 55..711 | 44..716 | 535 | 27.8 | Plus |
| AP-1gamma-PG | 963 | CG9113-PG | 55..711 | 44..716 | 535 | 27.8 | Plus |
