BS26557.complete Sequence
974 bp assembled on 2011-08-29
GenBank Submission: KX805145
> BS26557.complete
GAAGTTATCAGTCGACATGTTGCACTCAACTTTGATTTGTGCCACGCTCC
AAGCGCAGTTACTGCGCAAGGCCAGCCGCAAGTACGAGGACGCGGAGGGC
AAGCGAAAGAATAGCAACTCGGACAAGGAGGATGCCAGCGAACAGGCGCT
TATCCATGGCCGCAACTCCATTTCCACGGCGGCAGGTTCCACCACGGACA
TGCAGCATCGCCAGCGGAAACAGCGCAATCATCTCAATAACAATAATAGT
AAGCAAAATAGCTGTGATAAAACTGGCAACGATGACGACGACCGGGATCA
GCACGAATCGGAGGTGTTCCTCAAGGAGGGCGGCCGCATTGTCGAGCAGC
TCAAGTTAAAGACCTTCCCCAGCAGCCCGGCCCACTCGGCGGCCTCATCG
AACCAGACCGAACAAACCAACTCTATTGCCGCCTCCACCGCCACCGTAGA
TGTCCAGCTGGCTGGCCATCCCACCGACCCGTCCGTAGGTGGCGCCTCGG
AGCCACGTGCTCCGCTGGCCGGACACGATAGCATGCACAGTCTCAATGGC
AGCCTAAACGGAGAATCCGGACCGGTGAATGGCGCTCTCAAAGCACGGCT
GGATCGTGATGTGAACGCGGCGCTGGTGAATGACGCCGAGAGCGGTCGTC
GTCGTCCACAGAAACGGGGTGCCACCTACTTCACCATGCGCATCCTGGCC
CAGGCCTTCACAATGACGTTCCTGGCCGAGTGGGGCGATCGCTCCCAACT
GACCACCATTATTCTCGCCGCTAGCAAGGACGTTTACGGCGTTATCGCTG
GCGGTATTATTGGCCACTGCATCTGCACCGGCCTGGCTGTGATTGGTGGT
CGTCTCGTGGCTTCCAAAATCTCAGTGCGCACTGTCACCATTGTGGGTGG
CATTGTGTTCATCGGATTCGCCATCTACGCTGTCGCCATACCTCCGGATG
ACATTTAGAAGCTTTCTAGACCAT
BS26557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RG | 942 | CG42542-PG | 1..942 | 17..958 | 4710 | 100 | Plus |
| CG42542-RD | 1512 | CG42542-PD | 611..1512 | 57..958 | 4510 | 100 | Plus |
| CG42542-RE | 1512 | CG42542-PE | 611..1512 | 57..958 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RG | 1550 | CG42542-RG | 81..1022 | 17..958 | 4710 | 100 | Plus |
| CG42542-RD | 2215 | CG42542-RD | 782..1683 | 57..958 | 4510 | 100 | Plus |
| CG42542-RE | 2190 | CG42542-RE | 757..1658 | 57..958 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15200644..15201225 | 17..598 | 2910 | 100 | Plus |
| 3R | 32079331 | 3R | 15202023..15202204 | 598..779 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 15202264..15202445 | 777..958 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:53:23 has no hits.
BS26557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:14:09 Download gff for
BS26557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 86..1022 | 22..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:31 Download gff for
BS26557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 86..1022 | 22..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:37 Download gff for
BS26557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 86..1022 | 22..958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:37 Download gff for
BS26557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15200649..15201225 | 22..598 | 100 | -> | Plus |
| 3R | 15202024..15202203 | 599..778 | 100 | -> | Plus |
| 3R | 15202266..15202445 | 779..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:31 Download gff for
BS26557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11026371..11026947 | 22..598 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 599..778 | 100 | -> | Plus |
| arm_3R | 11027988..11028167 | 779..958 | 100 | | Plus |
BS26557.pep Sequence
Translation from 16 to 957
> BS26557.pep
MLHSTLICATLQAQLLRKASRKYEDAEGKRKNSNSDKEDASEQALIHGRN
SISTAAGSTTDMQHRQRKQRNHLNNNNSKQNSCDKTGNDDDDRDQHESEV
FLKEGGRIVEQLKLKTFPSSPAHSAASSNQTEQTNSIAASTATVDVQLAG
HPTDPSVGGASEPRAPLAGHDSMHSLNGSLNGESGPVNGALKARLDRDVN
AALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWGDRSQLTTIIL
AASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTVTIVGGIVFIG
FAIYAVAIPPDDI*
BS26557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-PG | 313 | CG42542-PG | 1..313 | 1..313 | 1592 | 100 | Plus |
| CG42542-PD | 503 | CG42542-PD | 204..503 | 14..313 | 1524 | 99.7 | Plus |
| CG42542-PE | 503 | CG42542-PE | 204..503 | 14..313 | 1524 | 99.7 | Plus |
| CG42542-PF | 323 | CG42542-PF | 205..323 | 195..313 | 597 | 100 | Plus |
| CG42542-PC | 323 | CG4196-PB | 205..323 | 195..313 | 597 | 100 | Plus |
