BS26562.complete Sequence
1436 bp assembled on 2011-08-26
GenBank Submission: KX804443
> BS26562.complete
GAAGTTATCAGTCGACATGAGTGGGAGGAGTATTCAACATTCCATTGAAG
TTGGGAAAGAGCGCAGGGACATGCGACACGAAGAGGATTGCAGAATGGAT
GAGCGCTTACGGACAAGACGTAAGATCGCAAATAAACTGGAGTCTGGTGG
CAAAACAGCACATGCTTTTGAGCGATTATTGGCAATTCGCACCATTAAAT
TGAGCAAGGGAAAATGTTCCGAAGACAGTGCAGAGCAGACGAAGTCTAGT
GATGATTGCAAGGCACAAACGCGTAAGGATGTAAATATCGAGGTCAAAGA
GACTTATTCCGGCGATTCCTCGCCTAACAGTGAGAGCGAGAATACAGCCC
AAAACGATCCGCAAATGAACGTAGAAAGCGAAGAACGCGTATCCAACCTG
GAACAGCTGAGTCGAGCAGTGTTAAAACGGAACGACATAAAGAACTTACT
GGGTAAACCTATTTTCGCGGAGGCTGTGATCGGATCCTTTGTGCGGATAA
ATGTTGGAAAAGTCTACTCCATCTACGAAACTATTGCTCTGCATCAGGAC
AGTAAGGACTACCGGGTAGACGGTAAGCGTACCAATCTGACCCTGGTCTT
GAGGTGCGGTTCCGAAAAGCGTTATTCACGTATAGACGTGGTTTCAAATC
AGCCAATTACACAAAAGGAATTCTTGTTGTGGTTGGAAACCAATCTGCGC
AATCGATGCACTTTACCAACGCTTAATGACATCGCCAAAAAACAGGTGCA
GGTAAAAAATGCCTGTAAATACTCGTACACTGAAACTGATGTGGAGAAGC
TGATTCAAGACAAAAAAGAAGCTGGTATAAAACAGAATGCCGCTTACAGA
AAAATTAGTCTAATTATAGAGCGTGATATGGCAGCGGGTATGAACGACGT
GGAAAAAGTGCAAGTGTTGGAGAAGAAAATCCTAGAGATCGACGAGGAAC
CCAGACCCCAGATCGAAAAATCTGGCCAGCATCGGTACCAAGTCCTTAGT
TCTACACGCGGGGTCCATGTGCCTACCATTTACCGGCACGAGTTGGGTGT
GCCTTCCGGCGGCAAAAGTTCCTTTGTTAAGCGAACCGCGAAGCCCGAAC
AACATGAGTTGGAGAAGTATATGCGACGAAAGTATAAAAAAAGTGCTGTA
GTCAGTCGCAGTCGATTTAAAAAAGCATTTGAAGATTGCGTGGATTCTTC
AGCTGTGGTCAACGATATTCATATGGAAAGTCAACAGAAAGAGGGTGATG
TCGAGACGGAGACGGAGACGGAGACGGAGAAAGGGACAGAGAAAGATCTC
CATTTGCAAAGGTTACACACTTTTAATATTGAATTAGATACCACGGGATT
GGTTCCTTTTCATGAAATTTTCCCGAATGTGAAGTTCAATAGCCCTTGGG
ACGAGATAATGAAAGGCTAGAAGCTTTCTAGACCAT
BS26562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31702-RA | 1326 | CG31702-PA | 1..1326 | 95..1420 | 6630 | 100 | Plus |
| CG31703-RA | 1320 | CG31703-PA | 1..1320 | 95..1420 | 6415 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31702-RA | 1710 | CG31702-RA | 76..1484 | 17..1421 | 6950 | 99.7 | Plus |
| CG31703-RA | 1727 | CG31703-RA | 97..1499 | 17..1421 | 6735 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22071219..22072558 | 17..1352 | 6605 | 99.7 | Plus |
| 2L | 23513712 | 2L | 22102972..22104305 | 1352..17 | 6390 | 98.8 | Minus |
| 2L | 23513712 | 2L | 22066516..22067157 | 94..735 | 3030 | 98.1 | Plus |
| 2L | 23513712 | 2L | 22072607..22072676 | 1352..1421 | 350 | 100 | Plus |
| 2L | 23513712 | 2L | 22102854..22102923 | 1421..1352 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:26:12 has no hits.
BS26562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:34 Download gff for
BS26562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31702-RA | 67..1474 | 17..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:59 Download gff for
BS26562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31702-RA | 76..1483 | 17..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:58 Download gff for
BS26562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31702-RA | 76..1483 | 17..1420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:58 Download gff for
BS26562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22071219..22072558 | 17..1352 | 99 | -> | Plus |
| 2L | 22072608..22072675 | 1353..1420 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:59 Download gff for
BS26562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22071219..22072558 | 17..1352 | 99 | -> | Plus |
| arm_2L | 22072608..22072675 | 1353..1420 | 100 | | Plus |
BS26562.pep Sequence
Translation from 16 to 1419
> BS26562.pep
MSGRSIQHSIEVGKERRDMRHEEDCRMDERLRTRRKIANKLESGGKTAHA
FERLLAIRTIKLSKGKCSEDSAEQTKSSDDCKAQTRKDVNIEVKETYSGD
SSPNSESENTAQNDPQMNVESEERVSNLEQLSRAVLKRNDIKNLLGKPIF
AEAVIGSFVRINVGKVYSIYETIALHQDSKDYRVDGKRTNLTLVLRCGSE
KRYSRIDVVSNQPITQKEFLLWLETNLRNRCTLPTLNDIAKKQVQVKNAC
KYSYTETDVEKLIQDKKEAGIKQNAAYRKISLIIERDMAAGMNDVEKVQV
LEKKILEIDEEPRPQIEKSGQHRYQVLSSTRGVHVPTIYRHELGVPSGGK
SSFVKRTAKPEQHELEKYMRRKYKKSAVVSRSRFKKAFEDCVDSSAVVND
IHMESQQKEGDVETETETETEKGTEKDLHLQRLHTFNIELDTTGLVPFHE
IFPNVKFNSPWDEIMKG*
BS26562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31702-PA | 441 | CG31702-PA | 1..441 | 27..467 | 2252 | 100 | Plus |
| CG31703-PA | 439 | CG31703-PA | 1..439 | 27..467 | 2209 | 98.4 | Plus |
| Rtf1-PB | 775 | CG10955-PB | 311..737 | 29..441 | 305 | 25.6 | Plus |
| Rtf1-PA | 775 | CG10955-PA | 311..737 | 29..441 | 305 | 25.6 | Plus |
| CG12498-PA | 261 | CG12498-PA | 51..180 | 125..249 | 156 | 33.8 | Plus |
