BS26567.complete Sequence
1262 bp assembled on 2011-09-19
GenBank Submission: KX804016
> BS26567.complete
GAAGTTATCAGTCGACATGTGGAGTCCGACGCACTGTAGTGTAACGGTGC
AGCGAGCGCGTGGGCTGCTCACCAAGGGCAAGAATGGCACCAACAACTGC
TTCGTCACCATTGCTCTGGGCAAGGAGAAGTACCAGACGTCCGTCAAGGA
CAAGGCCGAGACGAGCGTCAACTGGAACGAGGAGTGCGAACTGAAAATTC
CCGATCAGGGTAATCGCGCCGAGCTCACTTTGACCTGCCTGCACAGGAAC
AATCTGGGCATCGATGAGTTCCTCGGCCAGGCGACGCTGCCGCTCAACGA
GATGGATGTGTATGACCGGCCACGCGCCAAGTGGTTCAAGCTGGAGAGCA
AGCCCGGCAAGGAGAAGAAGAACAAGGAGCGGGGCGAGCTGGAGGTGCGC
ATCGCCTTCGTGGTCAAGTCCGGCTCGCTGACCGATCTCAGCAAGAAGGA
CAAGCACAAGTCTTCCATTGGCCAGCTGGCCAGCTCCGTGGGTGGCAGTC
TGTTGTCCATCGGCAACGGCGAGAAGCGGCGAGGCATCAAGAAGCTGGCT
GGCTCGCTTAGCTCTAAGCTGCACATCCGTAGCAAGAAGAAGAACCAGGA
GGCGGGCGCCGACGATAGTAGCTCCTTCGGCGGCTCCTTCGCCAGCCTGG
GCACGCCCAACAGCTCCAACGGCAGGGGCCAGAATGGTGGCAGTGGCAGG
CGACGTGGCGGCCAGCGGGCGGGCGAAGCCGATCCCGGCGTGATCAGCGA
GGACGAGGACGAGTTTGTGTTCGACAACCTCTCGCACAAGAGCTCCGGCA
GCTCACTTAACATCCAACGCATCGGCCTGCAGCCGCCGCCAGTCGGTACG
CCCAACTTTACGCCGCGCCACCCATCGCCCCTGCTGAACAACGGAGTTAG
TGGCGTCGGAAGCGGCAGCGCGAAAGATAAATACAACAACGACAACGACA
GCAACTCGCCCAGTCCCAAGTCTACGGAGCGCATCATAATTGGTCACGAG
AAGTCGGGATCGCATGCGGATCGCCGCTCGGAGATATCCGCCCAGCTGGC
CAAGAAATACGAGGGCAAGTCGCGCGAGGAACTAATGCTAATTGCCAACG
GAATGGAGAACGAGGCTCTGCTGCAGCGGCAGCGCGTGAAGGAGCTGGAA
GACTATCTGGACAACCTGCTGCTGCGCGTGATGGAGACGCACCCGAAGAT
CCTGCAGAATCCGTATTCGCGCACCACGTCCGCCAAGAGCGGCTAAAAGC
TTTCTAGACCAT
BS26567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rip11-RB | 1230 | CG6606-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
| Rip11-RC | 1263 | CG6606-PC | 1..1223 | 17..1239 | 6115 | 100 | Plus |
| Rip11-RE | 2448 | CG6606-PE | 1..914 | 17..930 | 4555 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rip11-RB | 2329 | CG6606-RB | 426..1659 | 14..1247 | 6170 | 100 | Plus |
| Rip11-RC | 2508 | CG6606-RC | 345..1570 | 14..1239 | 6130 | 100 | Plus |
| Rip11-RE | 3466 | CG6606-RE | 345..1261 | 14..930 | 4570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18639460..18640197 | 930..193 | 3675 | 99.9 | Minus |
| X | 23542271 | X | 18637413..18637575 | 1239..1077 | 815 | 100 | Minus |
| X | 23542271 | X | 18637634..18637788 | 1079..925 | 775 | 100 | Minus |
| X | 23542271 | X | 18640258..18640411 | 200..47 | 740 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-27 10:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 1260..1298 | 923..961 | 114 | 76.9 | Plus |
BS26567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:09 Download gff for
BS26567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RB | 344..1571 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:20 Download gff for
BS26567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RB | 348..1575 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:06 Download gff for
BS26567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RB | 429..1656 | 17..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:06 Download gff for
BS26567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18637411..18637573 | 1079..1244 | 98 | <- | Minus |
| X | 18637635..18637786 | 927..1078 | 100 | <- | Minus |
| X | 18639464..18640197 | 193..926 | 100 | <- | Minus |
| X | 18640266..18640410 | 48..192 | 100 | <- | Minus |
| X | 18647190..18647220 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:20 Download gff for
BS26567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18531444..18531606 | 1079..1244 | 98 | <- | Minus |
| arm_X | 18531668..18531819 | 927..1078 | 100 | <- | Minus |
| arm_X | 18533497..18534230 | 193..926 | 100 | <- | Minus |
| arm_X | 18534299..18534443 | 48..192 | 100 | <- | Minus |
| arm_X | 18541223..18541253 | 17..47 | 100 | | Minus |
BS26567.pep Sequence
Translation from 16 to 1245
> BS26567.pep
MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETS
VNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQATLPLNEMDVYD
RPRAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKHKSS
IGQLASSVGGSLLSIGNGEKRRGIKKLAGSLSSKLHIRSKKKNQEAGADD
SSSFGGSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISEDEDEF
VFDNLSHKSSGSSLNIQRIGLQPPPVGTPNFTPRHPSPLLNNGVSGVGSG
SAKDKYNNDNDSNSPSPKSTERIIIGHEKSGSHADRRSEISAQLAKKYEG
KSREELMLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPY
SRTTSAKSG*
BS26567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rip11-PB | 409 | CG6606-PB | 1..409 | 1..409 | 2111 | 100 | Plus |
| Rip11-PC | 420 | CG6606-PC | 1..408 | 1..408 | 2105 | 100 | Plus |
| Rip11-PE | 815 | CG6606-PE | 1..305 | 1..305 | 1578 | 99.7 | Plus |
| Rip11-PD | 826 | CG6606-PD | 1..305 | 1..305 | 1578 | 99.7 | Plus |
| Rip11-PA | 832 | CG6606-PA | 1..305 | 1..305 | 1578 | 99.7 | Plus |
| Rip11-PE | 815 | CG6606-PE | 706..815 | 300..409 | 545 | 97.3 | Plus |
| Rip11-PD | 826 | CG6606-PD | 706..814 | 300..408 | 539 | 97.2 | Plus |
