BS26576.complete Sequence
980 bp assembled on 2011-08-26
GenBank Submission: KX805032
> BS26576.complete
GAAGTTATCAGTCGACATGCGTGCCGATCTAGTGGCAAGCGGCAATGCCG
CACGCAATCGCCGCAGCGGCAGCAGCATGCGCAATGTCCCCGCCACTAAC
GGTGGTGGAGGCGGACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTCTGT
GGGCGGTGCCGCCGAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGCAAG
CCCCACGAGGACGTTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAAATA
CAGCGTGTGGACAGAGCACGTTCCCAAAGCCGTGGACGCAGCATTGGGCG
TTCCCAGAGCCGCAATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAGTGA
AACAGCGGCTTTCAGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAGAGA
AACAACCAGGCCAAGATCCCACCGCAGCGCCGGGCACCAAGCCAAATTCG
AGGTGTGGCAGGCGGACGGGTCGAGAAGCGTCGTAGTGCTCAGATTTCCC
AAAAGAAGGGAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGT
AGAAGATCTGTTGCAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAACAA
TTCTGCTTCTGCTCGTCGCTCACGCTCGCGCAATCGTGCTGCCGCCGTCG
CTGCTGCCGCTATCGCCGCTACTGTTCAGGGCCGGGCTAATCCTCGCCAG
AGACGCGGACGCAGTGCAGGCGCTGCCAAGGGCAAGATCATCAGAAATGG
TAAAGCTGACAAAAACGCGAAGGTCAAGGCGACAAACGGTGTCAAAAGTG
GCCCGCAGCAACAGGTTCGACGGGGACGCAGTCGTAGTCGTAAGCCTACA
GGTAAAAGCGAGACAAGTGGCCAGGAGACAAACCGGACTGGATCTGGAAA
TAGGCACTTGAAACTCAAAATTGACATATTTTTGTCTCTACTTTCTACTT
ACACTCTTGATTAAAAGCTTTCTAGACCAT
BS26576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RD | 948 | CG9775-PD | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG9775-RE | 1266 | CG9775-PE | 331..1170 | 17..856 | 4185 | 99.9 | Plus |
| CG9775-RC | 1266 | CG9775-PC | 331..1170 | 17..856 | 4185 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RD | 2400 | CG9775-RD | 1032..1979 | 17..964 | 4740 | 100 | Plus |
| CG9775-RE | 1966 | CG9775-RE | 732..1571 | 17..856 | 4185 | 99.9 | Plus |
| CG9775-RC | 1740 | CG9775-RC | 506..1345 | 17..856 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4639018..4639556 | 555..17 | 2695 | 100 | Minus |
| 3R | 32079331 | 3R | 4638431..4638841 | 964..554 | 2055 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:26:28 has no hits.
BS26576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:34 Download gff for
BS26576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1048..1993 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:09 Download gff for
BS26576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1032..1977 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:09 Download gff for
BS26576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1032..1977 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:09 Download gff for
BS26576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4639018..4639556 | 17..555 | 100 | | Minus |
| 3R | 4638433..4638839 | 556..962 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:09 Download gff for
BS26576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 464740..465278 | 17..555 | 100 | | Minus |
| arm_3R | 464155..464561 | 556..962 | 100 | <- | Minus |
BS26576.pep Sequence
Translation from 16 to 963
> BS26576.pep
MRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQRRPSVGGAAE
RVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRGRSIGRSQSRN
RDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRAPSQIRGVAGG
RVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSSGAVNNSASAR
RSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGKIIRNGKADKN
AKVKATNGVKSGPQQQVRRGRSRSRKPTGKSETSGQETNRTGSGNRHLKL
KIDIFLSLLSTYTLD*
BS26576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-PD | 315 | CG9775-PD | 1..315 | 1..315 | 1552 | 100 | Plus |
| CG9775-PE | 421 | CG9775-PE | 111..392 | 1..282 | 1378 | 99.3 | Plus |
| CG9775-PC | 421 | CG9775-PC | 111..392 | 1..282 | 1378 | 99.3 | Plus |
| CG9775-PA | 421 | CG9775-PA | 111..392 | 1..282 | 1378 | 99.3 | Plus |
| CG9915-PC | 820 | CG9915-PC | 123..433 | 10..296 | 192 | 27.7 | Plus |
