BS26582.complete Sequence
1922 bp assembled on 2012-04-25
GenBank Submission: KX800639
> BS26582.complete
GAAGTTATCAGTCGACATGAAGCACTCGCCGCTGATTGCCAGCGCTTGTC
TGGCGCTGGTGTTGATGTCATCCAGCCTGATTGGCAGCACCGAGGCCAGA
AACAAGAAGAAGTACGTCGGCGAGACGGGCGGCGATTTCGAGTTTATCGA
TGAGATAAACAAAAACACGCAGAGCAACAAGAATCTGGGCGAGCACAAGC
GCTGGATACACGATCCCTCGAGTGACCTTTGCCGACCGCTGAACTGCAAG
AAGCGTGAAATCTGCCTGCTGGAGGACGAGTTCAGTGCCGTTTGCGTGTC
GAAGAAGGAGCTCCACAAGAATCGTGATGAGATAATCACCAAGGCCAAGT
ATTTGGAGGAGGAGGCCAAGCGGCGTGTCAACCAGCAGGACAATCAGGAC
AGCCAGGACGCGGAGGATATCAACAACGACGACGAGGATAACAGCAGCGA
TGGCGGCAGCAGCAACTCCAGCCCCACAGGCACCAACAATGCCCAGGCCA
GTGTCCAGGGAAATGAGGAGACCGACGACGAAGATAAGAGCCTAAGTCTG
GGCGACGACGACGAGTCCAAGGAGGATGATGTCTTCTACGAGAACAGTAT
CGCCGCCGGCGATAAGCAGCAGCAACAACAGCAGCTATCCCAGCCTGCTG
CAGGACCTTCCGTTATTCAGCAGGACGACGACGAGGAGTTGGACAACTGC
AAGCCGTGTCCTGTGGCCAAGCCGACGTTCCTGTGCGGAGCCGACAACAG
GACCTACTCATCACTATGCAGATTGGATTATCACAATTGCATACATTCGA
CGTCCATACGGATCGCCTGCAAAGGATTCTGTCCCTGCAAGGAGATTGTC
GATGGAAAGCGGCTGCAGCGCATCTCGGGCTACAACAACAAGTACAACAA
GAAGATCAGCCTGGACCAGCAGCAGCAGCAGCAGCAACAACAACAACAGC
AGCAGCAGCAGCAGCAGGCCTACAAGGACAGCAACAACAACAACATCATG
ATGAACAGCGGCAACATAATGGGCGGCAACAACAACGACTTCAACACGAT
CATGAATGACAAAGAGGACAATAACCGGCACAACAACCACATCAATGCCC
AGTACACTTTCACGCCCGAGGAGATCAAATATGACAACAAGCACTACAAG
TACCTCAAGTACACGGCCTACAAGAAGGACTCCAAGTACCAGGAGGACAA
GCACAAGATGCGCAACTATAACGAGGTGGTCGAGAAGCAGCAGCAGAAGT
TCAATAAGAACAGCAACTTGAATGCCTATCCATCGAAATCGGCAGAGTGC
AAGCCGCAGCAACTGACGGCGATTGGCAACCGACTGCTGGACTGGTTCTC
GGTGATCATGGCGGACAGCAAGAAGCGGCGCCAGCACAGCCAGAAGTCAA
AGGCCCACTTCCCGCCCGCCTGCAAGACGGAGGCCAAGTGGATGTTCGGC
CACCTGGATCTGAATAACGACGGGCAGCTGTCGCTGCAGGAGATGTACGA
CCTGGAGCATGACCAGAACGAGCGTTGCATCAAGCCATTCATCGACACCT
GCGACTTGGACACGGATAGCTCGATCAACACACGGGAATGGTGCAGATGC
TTCGAGAAGACGGATCGTCCATGTGCCGCTGTGCGCCGGAGAATCGCCGG
CGACTTTGCAGGAGCCTACGCACCGGACTGCGACATCCAGGGATTCTACA
AGCCTACCCAGTGCCACAATTCCGTGGGAGTTTGCTGGTGCGTGGACAAG
CACGGAGTGGAGTTCGCCAACACACGCACACGCGGCAAACCCAATTGCGA
GTCCGTGGTTAATAATGCCGCATCGCTCACATCCGATGACGAGGACGAGG
GCGCCGATGACGAGGACAGCGCGGAGGGCAGTGCCGATCAGATGCTGGTC
TTCTAAAAGCTTTCTAGACCAT
BS26582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13830-RD | 1890 | CG13830-PD | 1..1890 | 17..1906 | 9435 | 99.9 | Plus |
| CG13830-RC | 1890 | CG13830-PC | 1..1890 | 17..1906 | 9435 | 99.9 | Plus |
| CG13830-RE | 1899 | CG13830-PE | 1..1899 | 17..1906 | 9310 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13830-RD | 4382 | CG13830-RD | 386..2276 | 16..1906 | 9440 | 99.9 | Plus |
| CG13830-RC | 2451 | CG13830-RC | 386..2276 | 16..1906 | 9440 | 99.9 | Plus |
| CG13830-RE | 2460 | CG13830-RE | 386..2285 | 16..1906 | 9315 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23075014..23075402 | 1662..1274 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 23081349..23081718 | 693..324 | 1835 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23075999..23076215 | 1058..842 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 23076828..23076976 | 842..694 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 23073864..23074003 | 1799..1660 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 23112203..23112345 | 158..16 | 700 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23075796..23075916 | 1178..1058 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 23072622..23072729 | 1906..1799 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23081828..23081930 | 324..222 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 23075634..23075732 | 1274..1176 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 23082095..23082167 | 225..153 | 365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2990 | 857..1092 | 275 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2864..2995 | 919..1046 | 245 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2658 | 944..1313 | 234 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2826 | 392..635 | 156 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6882 | 381..488 | 155 | 61.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 991..1058 | 615..682 | 142 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2467..2547 | 419..496 | 137 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6831 | 381..488 | 135 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6959 | 381..508 | 129 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6683..6777 | 391..488 | 122 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 438..488 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6810 | 419..488 | 116 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6844 | 381..489 | 115 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6881 | 381..505 | 115 | 57.3 | Plus |
BS26582.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:08 Download gff for
BS26582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RD | 372..2259 | 17..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:13 Download gff for
BS26582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RC | 387..2274 | 17..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:29 Download gff for
BS26582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13830-RC | 387..2274 | 17..1904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:29 Download gff for
BS26582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23075797..23075916 | 1058..1177 | 100 | <- | Minus |
| 3R | 23076828..23076976 | 694..842 | 100 | <- | Minus |
| 3R | 23076000..23076214 | 843..1057 | 100 | <- | Minus |
| 3R | 23072624..23072728 | 1800..1904 | 100 | <- | Minus |
| 3R | 23073864..23074001 | 1662..1799 | 100 | <- | Minus |
| 3R | 23075015..23075401 | 1275..1661 | 100 | <- | Minus |
| 3R | 23075634..23075730 | 1178..1274 | 100 | <- | Minus |
| 3R | 23081349..23081717 | 325..693 | 99 | <- | Minus |
| 3R | 23081828..23081930 | 222..324 | 100 | <- | Minus |
| 3R | 23082099..23082165 | 155..221 | 100 | <- | Minus |
| 3R | 23112207..23112344 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:13 Download gff for
BS26582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18937929..18938066 | 17..154 | 100 | | Minus |
| arm_3R | 18900737..18901123 | 1275..1661 | 100 | <- | Minus |
| arm_3R | 18901356..18901452 | 1178..1274 | 100 | <- | Minus |
| arm_3R | 18898346..18898450 | 1800..1904 | 100 | <- | Minus |
| arm_3R | 18899586..18899723 | 1662..1799 | 100 | <- | Minus |
| arm_3R | 18901519..18901638 | 1058..1177 | 100 | <- | Minus |
| arm_3R | 18901722..18901936 | 843..1057 | 100 | <- | Minus |
| arm_3R | 18902550..18902698 | 694..842 | 100 | <- | Minus |
| arm_3R | 18907071..18907439 | 325..693 | 99 | <- | Minus |
| arm_3R | 18907550..18907652 | 222..324 | 100 | <- | Minus |
| arm_3R | 18907821..18907887 | 155..221 | 100 | <- | Minus |
BS26582.pep Sequence
Translation from 16 to 1905
> BS26582.pep
MKHSPLIASACLALVLMSSSLIGSTEARNKKKYVGETGGDFEFIDEINKN
TQSNKNLGEHKRWIHDPSSDLCRPLNCKKREICLLEDEFSAVCVSKKELH
KNRDEIITKAKYLEEEAKRRVNQQDNQDSQDAEDINNDDEDNSSDGGSSN
SSPTGTNNAQASVQGNEETDDEDKSLSLGDDDESKEDDVFYENSIAAGDK
QQQQQQLSQPAAGPSVIQQDDDEELDNCKPCPVAKPTFLCGADNRTYSSL
CRLDYHNCIHSTSIRIACKGFCPCKEIVDGKRLQRISGYNNKYNKKISLD
QQQQQQQQQQQQQQQQQAYKDSNNNNIMMNSGNIMGGNNNDFNTIMNDKE
DNNRHNNHINAQYTFTPEEIKYDNKHYKYLKYTAYKKDSKYQEDKHKMRN
YNEVVEKQQQKFNKNSNLNAYPSKSAECKPQQLTAIGNRLLDWFSVIMAD
SKKRRQHSQKSKAHFPPACKTEAKWMFGHLDLNNDGQLSLQEMYDLEHDQ
NERCIKPFIDTCDLDTDSSINTREWCRCFEKTDRPCAAVRRRIAGDFAGA
YAPDCDIQGFYKPTQCHNSVGVCWCVDKHGVEFANTRTRGKPNCESVVNN
AASLTSDDEDEGADDEDSAEGSADQMLVF*
BS26582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13830-PD | 629 | CG13830-PD | 1..629 | 1..629 | 3394 | 100 | Plus |
| CG13830-PC | 629 | CG13830-PC | 1..629 | 1..629 | 3394 | 100 | Plus |
| CG13830-PE | 632 | CG13830-PE | 1..632 | 1..629 | 3380 | 99.5 | Plus |
