BS26587.complete Sequence
1940 bp assembled on 2011-10-21
GenBank Submission: KX804024
> BS26587.complete
GAAGTTATCAGTCGACATGGATCAGCCACTGGTGGTGCAGGCGGAGTACT
CCTTCATGGGCAGCAATAACGACGAGCTGTGCTTCCAGAAGGGCGATGTC
ATCACGGTTACCCAGCGCGAGGATGGTGGCTGGTGGGAGGGAACGCTGAA
CGATAAGACTGGCTGGTTTCCCAGCAACTATGTGAATGAGTGCAAGGTGC
AGCTGCCTCTAACGGAGACCATAAGGCCGCCGGAGGAGATCCAGGAGTAT
CGGTCTGTGGTGCTCAAGGATCTGCTTGACTCGGAGCGCGCCCATGTGGC
CGAGCTGCAGGGTCTGCTCGAGAATTTCTTGGAGCCCATGCAACAGACGC
AAATACTCAGTCAGGATGAGTACGCCCAGCTGATGTGTAACTTTGTAGAG
ATTGTGCGTACGCACGAGGATTTGCTTATCCAGATCGAGGAGTGCAACGA
TCGAGTGGGAAAACTATTTCTCACCAGCGCCCCCTTGATGAAGAAGGTGC
ACCAGGCGTACTGCGCTGCCCATCCAAAGGCCATTGTCATACTGGATAAG
TACAAGGACGAGCTGGAAAAGTATATGGAACGACAGGGCGCAGCCACTCC
TGGATTACTTGTGCTCACGACGGGTCTATCAAAGCCCTTCCGGCGACTGG
ACAAATACTCGGCCATGCTGCAGGAGCTGGAGCGGCATATGGAGAGCAGT
CATCCGGATCGCGGCGACACCCAGCGGAGTGTTGCCGTGTACAAAGACAT
AGCTGCCACCTGCTCGGCCACCCGTCGCCAAAAGGAGCTGGAGCTGCAAG
TGCTCACGGGGCCAGTGCGTGGATGGCAGGGCCAAGAGCTGAGCACCCTC
GGGGACATCATCCACATGGGCAGCGTTGCAGTTGGAGCTGATCATCGCGA
CCGATACTTTGTGCTCTTCCCTCAAACATTGCTATTCCTTAGCGTTAGTC
AGCGGATGAGTGCATTCATCTATGAGGGCAAGCTACCCTTAACTGGGATC
ATAGTGAATCGCCTGGAGGACACGGATGCCCTGAAGAACGCCTTTGAGAT
AAGCAGTCCCTTGATCGATCGCATTGTAGCAGTTTGTCAGGGTCCGAATG
AGGCCAACAAGTGGGTGGAGCTGCTCAATGCCAATAATCCCAGCTTGCCG
ATGGGCATCAAACGGCAATTGAGTAACTTGAGCAACTCTTCGCTAGGACA
CCTAAATGCCGCTCATATGTCGCCGCCATCAAGCCACATACTCCTACCGC
CCGGCGGCCGTCCGCCAGCCACTCCCAGCAGCATCCCGGCCGGCAGCAGC
AGCGGAGGGAGCCACAGCCACCAGGGGTCTCCGGCCACCAACTCGATGTC
GCATCACAAACGGAGCCAGTCGTTCAACCACCATCTCAGCTACAATCAGT
ACACGCCCACTCAGCCTCCACCACATCATCTGCATCCACCACAACCACCA
AGTCTGCCAAGTCATCTGGGGGCATCCGGCCCCAGATCAAGTTCAGCCCA
GACACCAAACAGCAAGACAGCAGCTCCACTCCAGGCGTCATCCATGGACG
CCAGTCCAGCAATTCAGGCAGCGGCAGCAGCAGCGGCGGCAGCGGTGGGA
ATGGGGGTGCCAAGCGCAAGGAAAGGAAGCACAAAGGCTAACTGGACCAT
CAGCTGCCTGCGACCCACGCCGCCGTTGCGACCCAGTTTATTGAATGCCA
CCAGCGGATCGGGAAGTGGCAGCGGTGGCAGCGGTGGCGGCGGCAGCAGC
TCCAGCAATGCCCTGGCCAGCTACTGCAGCGGAAGGAAGAACCAGCCCAC
CTATGAGGAGGACGCCCTGGTGCTCCGGGTTTTCGAGGCCTACTGTGCCG
CCTATCAGAACAATGCCAGGAACACCATCCACTCGGGTAAGTGGCGAAGC
CCATCCCAGATGTGCTTCATATAGAAGCTTTCTAGACCAT
BS26587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RtGEF-RE | 1908 | CG10043-PE | 1..1908 | 17..1924 | 9540 | 100 | Plus |
| RtGEF-RB | 2064 | CG10043-PB | 1..1871 | 17..1887 | 9355 | 100 | Plus |
| RtGEF-RA | 2064 | CG10043-PA | 1..1871 | 17..1887 | 9355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RtGEF-RE | 2995 | CG10043-RE | 509..2416 | 17..1924 | 9540 | 100 | Plus |
| RtGEF-RB | 2976 | CG10043-RB | 149..2019 | 17..1887 | 9355 | 100 | Plus |
| RtGEF-RA | 3336 | CG10043-RA | 509..2379 | 17..1887 | 9355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20356085..20356506 | 556..977 | 2110 | 100 | Plus |
| 2L | 23513712 | 2L | 20360013..20360433 | 1217..1637 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20355410..20355747 | 17..354 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20360563..20360850 | 1637..1924 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 20356560..20356801 | 975..1216 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 20355806..20356007 | 355..556 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 682..716 | 1750..1716 | 130 | 85.7 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 572..707 | 1853..1716 | 127 | 56.8 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 634..724 | 1657..1569 | 126 | 61.5 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 695..757 | 1607..1545 | 126 | 66.7 | Minus |
BS26587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 14:36:09 Download gff for
BS26587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtGEF-RE | 486..2393 | 17..1924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:24 Download gff for
BS26587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RE | 509..2416 | 17..1924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:25 Download gff for
BS26587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RE | 509..2416 | 17..1924 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:25 Download gff for
BS26587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20355410..20355747 | 17..354 | 100 | -> | Plus |
| 2L | 20355806..20356006 | 355..555 | 100 | -> | Plus |
| 2L | 20356085..20356505 | 556..976 | 100 | -> | Plus |
| 2L | 20356562..20356801 | 977..1216 | 100 | -> | Plus |
| 2L | 20360013..20360433 | 1217..1637 | 100 | -> | Plus |
| 2L | 20360564..20360850 | 1638..1924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:24 Download gff for
BS26587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20355806..20356006 | 355..555 | 100 | -> | Plus |
| arm_2L | 20355410..20355747 | 17..354 | 100 | -> | Plus |
| arm_2L | 20356085..20356505 | 556..976 | 100 | -> | Plus |
| arm_2L | 20356562..20356801 | 977..1216 | 100 | -> | Plus |
| arm_2L | 20360013..20360433 | 1217..1637 | 100 | -> | Plus |
| arm_2L | 20360564..20360850 | 1638..1924 | 100 | | Plus |
BS26587.pep Sequence
Translation from 16 to 1923
> BS26587.pep
MDQPLVVQAEYSFMGSNNDELCFQKGDVITVTQREDGGWWEGTLNDKTGW
FPSNYVNECKVQLPLTETIRPPEEIQEYRSVVLKDLLDSERAHVAELQGL
LENFLEPMQQTQILSQDEYAQLMCNFVEIVRTHEDLLIQIEECNDRVGKL
FLTSAPLMKKVHQAYCAAHPKAIVILDKYKDELEKYMERQGAATPGLLVL
TTGLSKPFRRLDKYSAMLQELERHMESSHPDRGDTQRSVAVYKDIAATCS
ATRRQKELELQVLTGPVRGWQGQELSTLGDIIHMGSVAVGADHRDRYFVL
FPQTLLFLSVSQRMSAFIYEGKLPLTGIIVNRLEDTDALKNAFEISSPLI
DRIVAVCQGPNEANKWVELLNANNPSLPMGIKRQLSNLSNSSLGHLNAAH
MSPPSSHILLPPGGRPPATPSSIPAGSSSGGSHSHQGSPATNSMSHHKRS
QSFNHHLSYNQYTPTQPPPHHLHPPQPPSLPSHLGASGPRSSSAQTPNSK
TAAPLQASSMDASPAIQAAAAAAAAAVGMGVPSARKGSTKANWTISCLRP
TPPLRPSLLNATSGSGSGSGGSGGGGSSSSNALASYCSGRKNQPTYEEDA
LVLRVFEAYCAAYQNNARNTIHSGKWRSPSQMCFI*
BS26587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RtGEF-PE | 635 | CG10043-PE | 1..635 | 1..635 | 3325 | 100 | Plus |
| RtGEF-PB | 687 | CG10043-PB | 1..624 | 1..624 | 3260 | 100 | Plus |
| RtGEF-PA | 687 | CG10043-PA | 1..624 | 1..624 | 3260 | 100 | Plus |
| RtGEF-PG | 923 | CG10043-PG | 1..623 | 1..623 | 3254 | 100 | Plus |
| RtGEF-PD | 973 | CG10043-PD | 1..623 | 1..623 | 3254 | 100 | Plus |
