BS26591.complete Sequence
1937 bp assembled on 2011-10-14
GenBank Submission: KX804972
> BS26591.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCA
TGCTACGGATTATTATGTGCTTGCATTTGATGCCCAAGGAGACGACGAAG
AGAGCTCACTGCAGAACCTGGGCAACGGATTCACCTCCAAGCTGCCACCG
GGCTATCTCACCCACGGCCTGCCCACCGTTAAGGACGTCGCCCCGGCCAT
CACACCACTCGAGATCAAGAAGGAGACTGAAGTGAAGAAGGAGGTCAACG
AGCTGTCCGAGGAGCAGAAGCAGATGATCATACTGTCGGAGAACTTCCAG
CGGTTCGTGGTGCGTGCCGGCCGCGTCATCGAACGGGCCCTCTCGGAGAA
TGTGGACATATACACGGACTACATCGGCGGCGGCGACAGCGAGGAGGCGA
ACGACGAGCGATCGCATGCGCGGCTCTCGCTGAACCGCGTCTTCTACGAC
GAGCGCTGGTCGAAGAACCGCTGCATCACCAGCATGGACTGGTCCACCCA
CTTCCCCGAGCTGGTGGTGGGCTCGTACCACAACAACGAGGAGAGTCCGA
ACGAGCCGGACGGCGTGGTGATGGTGTGGAACACCAAGTTCAAGAAGAGC
ACGCCCGAGGACGTCTTCCACTGCCAGAGCGCGGTGATGTCCACCTGCTT
TGCCAAGTTCAATCCCAACCTGATCCTCGGCGGCACCTATTCGGGCCAGA
TTGTGCTGTGGGACAATCGCGTGCAGAAGCGCACGCCCATACAGCGCACG
CCCCTCAGTGCCGCGGCGCACACGCATCCCGTCTACTGCCTCCAAATGGT
GGGCACCCAGAATGCGCACAACGTCATCTCCATATCCTCGGACGGCAAGC
TGTGCTCCTGGTCGCTGGACATGCTGTCCCAACCACAGGACACGCTGGAG
CTGCAGCAGCGCCAGTCGAAGGCCATTGCCATTACATCGATGGCCTTCCC
GGCCAACGAGATCAATAGCCTGGTGATGGGCAGTGAGGACGGCTACGTCT
ACTCCGCCTCGCGCCACGGCCTGCGCTCCGGGGTCAACGAGGTTTACGAA
CGCCATCTTGGCCCTATCACTGGCATATCCACGCACTACAACCAGCTGTC
GCCGGACTTTGGCCACCTCTTCCTAACCTCGTCCATTGACTGGACCATCA
AGCTCTGGTCGCTAAAGGACACAAAGCCGCTGTACTCCTTTGAGGACAAC
TCCGACTACGTGATGGACGTCGCCTGGTCGCCCGTGCATCCCGCACTCTT
CGCCGCCGTCGACGGCAGCGGCCGCCTGGATCTGTGGAACCTCAACCAAG
ACACGGAGGTGCCGACCGCCTCGATTGTCGTGGCGGGAGCACCAGCCCTT
AACCGCGTCTCTTGGACCCCATCCGGTCTGCACGTGTGCATCGGCGACGA
GGCCGGCAAGCTGTACGTGTACGACGTGGCCGAGAACCTGGCGCAGCCAT
CGCGCGACGAATGGTCGCGGTTCAACACCCATCTTAGCGAGATCAAGATG
AACCAGAGCGATGAGGTCTAGAAGCTTTCTAGACCAT
BS26591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RN | 1905 | CG18000-PN | 1..1905 | 17..1921 | 9510 | 99.9 | Plus |
| sw-RA | 1905 | CG18000-PA | 1..1905 | 17..1921 | 9510 | 99.9 | Plus |
| sw-RI | 1884 | CG18000-PI | 1..1884 | 17..1921 | 9160 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RN | 2862 | CG18000-RN | 200..2104 | 17..1921 | 9510 | 99.9 | Plus |
| sw-RA | 2699 | CG18000-RA | 200..2104 | 17..1921 | 9510 | 99.9 | Plus |
| sw-RI | 2678 | CG18000-RI | 200..2083 | 17..1921 | 9160 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20229139..20230063 | 1568..644 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 20182758..20183682 | 1568..644 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20205922..20206846 | 1568..644 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20174931..20175855 | 1568..644 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20190482..20191406 | 1568..644 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20198198..20199122 | 1568..644 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20213615..20214507 | 1536..644 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20221297..20222189 | 1536..644 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20182338..20182693 | 1921..1566 | 1780 | 100 | Minus |
| X | 23542271 | X | 20228719..20229074 | 1921..1566 | 1780 | 100 | Minus |
| X | 23542271 | X | 20220879..20221226 | 1921..1574 | 1695 | 99.1 | Minus |
| X | 23542271 | X | 20190123..20190417 | 1860..1566 | 1430 | 99 | Minus |
| X | 23542271 | X | 20197839..20198133 | 1860..1566 | 1430 | 99 | Minus |
| X | 23542271 | X | 20205563..20205857 | 1860..1566 | 1430 | 99 | Minus |
| X | 23542271 | X | 20213258..20213544 | 1860..1574 | 1390 | 99 | Minus |
| X | 23542271 | X | 20191789..20191966 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20199505..20199682 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20176238..20176415 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20207229..20207406 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20184060..20184237 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20214885..20215062 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20222567..20222744 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20230441..20230618 | 644..467 | 890 | 100 | Minus |
| X | 23542271 | X | 20235508..20235663 | 172..17 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 318..172 | 735 | 100 | Minus |
| X | 23542271 | X | 20174589..20174768 | 1921..1736 | 655 | 91.4 | Minus |
| X | 23542271 | X | 20234775..20234904 | 446..317 | 650 | 100 | Minus |
| X | 23542271 | X | 20201591..20201720 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20178270..20178399 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 446..317 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:11 has no hits.
BS26591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:39 Download gff for
BS26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RA | 384..2288 | 17..1921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:50 Download gff for
BS26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RA | 200..2104 | 17..1921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:41 Download gff for
BS26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RA | 200..2104 | 17..1921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:41 Download gff for
BS26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20235509..20235663 | 17..171 | 100 | | Minus |
| X | 20228719..20229072 | 1568..1921 | 100 | <- | Minus |
| X | 20229140..20230062 | 645..1567 | 99 | <- | Minus |
| X | 20230441..20230617 | 468..644 | 100 | <- | Minus |
| X | 20233423..20233443 | 447..467 | 100 | <- | Minus |
| X | 20234775..20234902 | 319..446 | 100 | <- | Minus |
| X | 20235288..20235434 | 172..318 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:50 Download gff for
BS26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20106362..20106508 | 172..318 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 17..171 | 100 | | Minus |
| arm_X | 20100214..20101136 | 645..1567 | 99 | <- | Minus |
| arm_X | 20099793..20100146 | 1568..1921 | 100 | <- | Minus |
| arm_X | 20101515..20101691 | 468..644 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 447..467 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 319..446 | 100 | <- | Minus |
BS26591.pep Sequence
Translation from 16 to 1920
> BS26591.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYY
VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEI
KKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYT
DYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELV
VGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNP
NLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNA
HNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEIN
SLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH
LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDG
SGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLY
VYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV*
BS26591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-PN | 634 | CG18000-PN | 1..634 | 1..634 | 3308 | 100 | Plus |
| sw-PA | 634 | CG18000-PA | 1..634 | 1..634 | 3308 | 100 | Plus |
| sw-PF | 650 | CG18000-PF | 1..650 | 1..634 | 3281 | 97.5 | Plus |
| sw-PB | 627 | CG18000-PB | 1..627 | 1..634 | 3257 | 98.9 | Plus |
| sw-PC | 626 | CG18000-PC | 1..626 | 1..634 | 3250 | 98.7 | Plus |
