BS26606.complete Sequence
983 bp assembled on 2011-08-29
GenBank Submission: KX800178
> BS26606.complete
GAAGTTATCAGTCGACATGCAGCTAATTTATCGTGAACTCGAGGAGGACA
TACTTCGACGCACTAATGCAGTCTTTCCGGTACAAAATTGCTTTGTTGAG
GTCCTCCCCGATCAGTTTATCATTCCCAGAAAGTACGTGGAGCTGGGCGA
ATCGATTCGATCGCTTCCCGTTTACCAGGACGACGTATGGATGGTGTCCT
ATCCACGAACCGGATCGACGTGGGCCCAGGAGATGGTCTGGCTGCTGGGT
CACCAATTGGATTACGTGGCCGCTGAGCAAGATTTAAGATTGCGATCTCC
GCTCATTGAACTATCCGCTTTGTTTAGCATCGATCATCACGAGACGGTGG
CCCAAAAGTTTGGCAATACCGTGGATCTGGTTCGCAATCTGCCACGCCCA
CGTTTTGCACGCTCCCACCTGCCGTGGCCTTTGCTACCCGAGCAATTTGA
GACGGTAAAGCCGAGGATCGTGTATACTGCTCGAAATCCCAAGGATCTTT
GCGTCTCGTACTATCACTACTTCAAGTTGCTGCACGGCATGAATGGGGAC
TTTGAGCAATTCGTGGATCTCTTCCTGGAGGGGCACACACCGATGGGATC
CTATTGGCGGCACGTCCTGCCCTTTTGGAAACGTAGCCAGGATGATAATG
TGCTGTTCATCAAGTACGAGGACATGGTCAAGGATCTGCCCAGTGTAGTT
CGCCGCTGTGCCAGATTCCTGGGCGTTCAAAGTCTCCTCGATGTGAGCAC
TTTGCAGAAATTGTGCGATCACCTCACATTCGACAAGATGCGGGCGAACA
AGGCGGTGAATCTGGAGAAGCTGCTCCCGGAATCATCTTCCAAGTTCATA
CGCAATGGCAAGATCGGGGATTGGCGCAATCACATGGGCAATGAGATGTC
GGAACGCTTTGATGAATGGACCGAGAGACATATGCGTGGTTCTGGATTAA
ACTTTGACTACGTGTGAAAGCTTTCTAGACCAT
BS26606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St2-RB | 951 | CG16733-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
| St2-RA | 951 | CG16733-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St2-RB | 1528 | CG16733-RB | 28..981 | 16..969 | 4770 | 100 | Plus |
| St2-RA | 1137 | CG16733-RA | 28..981 | 16..969 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9252350..9252967 | 352..969 | 3090 | 100 | Plus |
| 3R | 32079331 | 3R | 9251870..9252205 | 16..351 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:00 has no hits.
BS26606.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:19:48 Download gff for
BS26606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16733-RA | 19..968 | 17..966 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:53 Download gff for
BS26606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St2-RA | 29..978 | 17..966 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:59 Download gff for
BS26606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St2-RA | 29..978 | 17..966 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:59 Download gff for
BS26606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9251871..9252205 | 17..351 | 100 | -> | Plus |
| 3R | 9252350..9252964 | 352..966 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:53 Download gff for
BS26606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5077593..5077927 | 17..351 | 100 | -> | Plus |
| arm_3R | 5078072..5078686 | 352..966 | 100 | | Plus |
BS26606.pep Sequence
Translation from 16 to 966
> BS26606.pep
MQLIYRELEEDILRRTNAVFPVQNCFVEVLPDQFIIPRKYVELGESIRSL
PVYQDDVWMVSYPRTGSTWAQEMVWLLGHQLDYVAAEQDLRLRSPLIELS
ALFSIDHHETVAQKFGNTVDLVRNLPRPRFARSHLPWPLLPEQFETVKPR
IVYTARNPKDLCVSYYHYFKLLHGMNGDFEQFVDLFLEGHTPMGSYWRHV
LPFWKRSQDDNVLFIKYEDMVKDLPSVVRRCARFLGVQSLLDVSTLQKLC
DHLTFDKMRANKAVNLEKLLPESSSKFIRNGKIGDWRNHMGNEMSERFDE
WTERHMRGSGLNFDYV*
BS26606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St2-PB | 316 | CG16733-PB | 1..316 | 1..316 | 1697 | 100 | Plus |
| St2-PA | 316 | CG16733-PA | 1..316 | 1..316 | 1697 | 100 | Plus |
| St1-PB | 338 | CG5428-PB | 58..327 | 45..314 | 427 | 31.4 | Plus |
| St4-PB | 346 | CG6704-PB | 34..341 | 26..307 | 374 | 29 | Plus |
| St4-PA | 346 | CG6704-PA | 34..341 | 26..307 | 374 | 29 | Plus |
