BS26612.complete Sequence
1076 bp assembled on 2011-09-20
GenBank Submission: KX801668
> BS26612.complete
GAAGTTATCAGTCGACATGTCGCGGTTGTGCACTTCTTTGGTCATCATTT
TGGGTCTCATCCTCTCGAGCGGTGGCACTCACATATGCCTGAGCTCCAAT
CTGTGTGTTCCCAGGGAAAATTGTCGTGAAGAGATGCCGTTCTTCGACTT
TAGTTCCACCATTGAGTGCTCCGACGAAGAAGTGTGCTGTGAAAAGTCAA
ATGTGATAGGCATGAGTAAGAGTCCTCCACAACATTCAGTGGACACACTT
CTTAGGACAAGTTATCCAAATGCCCTGGATGGAAGCCCTCAGGTGTTTGG
TGACCAAACCAAACCGAATCAATTTCCCTGGGTGACGGCTTTGTTCGCCA
AGGGATCTTATCTGGGAGGAGGATCTCTGATTACCCCAGGACTTGTACTA
ACCGCTGCCCACATCCTAGCGGGATTATCCCCCAATGACATCATGGTTAG
AGCTGGCGAATGGGATCTATCCTCCAGTGAGAAACTAAATCCACCGATGG
ATCGTCAAGTGATCAAGATCATGGAGCATGAGGCCTTTAACTACAGCAGC
GGAGCCAACGACTTGGCGCTTCTCTTCTTGGATTCGCCTTTTGAGTTGAG
GGCCAACATCCAGACCATTCGCTTACCCATTCCGGACAAGACTTTCGATC
GAAGGATATGCACGGTCGCAGGTTGGGGAATGAGATCGTCGACCGATGTT
GATATTCAGACCATCCAGCAGAAGGTCGATTTGCCCGTTGTCGAAAGTTC
CAAATGCCAGAGGCAGCTCAGACTAACTAAAATGGGCTCGAACTACCAGC
TGCCCGCCAGTTTAATGTGTGCCGGCGGTGAGGAGGGACGGGATGTCTGT
TCTCTATTCGGAGGATTCGCCCTTTTCTGCTCCCTGGACGATGATCCCAA
TCGCTACGAGCAGGCGGGCATCGTAAGCTTCGGCGTTGGATGCGGCCAGG
CAAACGTTCCGACCACCTTCACCCATGTGTCCAAGTTCATGGAGTGGATC
AATCCGCACTTGGAGCAAGTGCTTAGCGTGCCTGGAAATATGCTTCCTGC
CATGTCATAAAAGCTTTCTAGACCAT
BS26612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3117-RB | 1044 | CG3117-PB | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3117-RB | 1217 | CG3117-RB | 16..1059 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2846084..2846939 | 1060..205 | 4280 | 100 | Minus |
| 2L | 23513712 | 2L | 2847004..2847197 | 210..17 | 955 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:24:52 has no hits.
BS26612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:45 Download gff for
BS26612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 1..1042 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:38 Download gff for
BS26612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 16..1057 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:56 Download gff for
BS26612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 16..1057 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:56 Download gff for
BS26612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2846086..2846938 | 206..1058 | 100 | <- | Minus |
| 2L | 2847009..2847197 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:38 Download gff for
BS26612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2846086..2846938 | 206..1058 | 100 | <- | Minus |
| arm_2L | 2847009..2847197 | 17..205 | 100 | | Minus |
BS26612.pep Sequence
Translation from 16 to 1059
> BS26612.pep
MSRLCTSLVIILGLILSSGGTHICLSSNLCVPRENCREEMPFFDFSSTIE
CSDEEVCCEKSNVIGMSKSPPQHSVDTLLRTSYPNALDGSPQVFGDQTKP
NQFPWVTALFAKGSYLGGGSLITPGLVLTAAHILAGLSPNDIMVRAGEWD
LSSSEKLNPPMDRQVIKIMEHEAFNYSSGANDLALLFLDSPFELRANIQT
IRLPIPDKTFDRRICTVAGWGMRSSTDVDIQTIQQKVDLPVVESSKCQRQ
LRLTKMGSNYQLPASLMCAGGEEGRDVCSLFGGFALFCSLDDDPNRYEQA
GIVSFGVGCGQANVPTTFTHVSKFMEWINPHLEQVLSVPGNMLPAMS*
BS26612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3117-PB | 347 | CG3117-PB | 1..347 | 1..347 | 1829 | 100 | Plus |
| CG14990-PA | 322 | CG14990-PA | 51..303 | 82..334 | 659 | 47.8 | Plus |
| SPH93-PA | 494 | CG6639-PA | 250..486 | 96..332 | 606 | 49.2 | Plus |
| CG18478-PA | 294 | CG18478-PA | 36..293 | 84..341 | 591 | 45.3 | Plus |
| CG31827-PA | 294 | CG31827-PA | 36..293 | 84..341 | 591 | 45.3 | Plus |
