BS26633.complete Sequence
1253 bp assembled on 2011-08-29
GenBank Submission: KX804330
> BS26633.complete
GAAGTTATCAGTCGACATGGATTATCGTTTGGTGCCATGTGGTTGCTGGT
TGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGTTTCCACCGGTCCACACG
GCTGACGTCACCATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCCGGCT
GGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAGCCCG
GCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGCGATG
GCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGGGACT
GGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCACCAGG
TGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAAGATT
TTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGTTATC
CAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAATGTAC
AAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCATCTG
ATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGACTCGT
CCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTCGCCA
AACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAACAGTT
CAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATCTGCC
GGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGACCTCT
CTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCTGGAG
GAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGTACGA
AACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAAGTGG
AATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTCCGAT
CAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAAGTGTC
AGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAACGGAGG
CTGCGGCCGCCACGGTATGGCGGGTGATGGCCGTAGCTGCCTTCAGTCGC
AAACACTTCATTGCCAACCATCCTTTTGCTTTCTACGTGAAGACCCATTA
CGATCTGCCGATATTCACTGGGCGCTACTTGGGTTAAAAGCTTTCTAGAC
CAT
BS26633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1221 | CG9453-PI | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| Spn42Da-RJ | 1125 | CG9453-PJ | 1..1125 | 113..1237 | 5625 | 100 | Plus |
| Spn42Da-RF | 1236 | CG9453-PF | 1..1099 | 17..1115 | 5495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1370 | CG9453-RI | 59..1279 | 17..1237 | 6105 | 100 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 203..1399 | 41..1237 | 5985 | 100 | Plus |
| Spn42Da-RF | 1669 | CG9453-RF | 59..1157 | 17..1115 | 5495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878359 | 973..41 | 4665 | 100 | Minus |
| 2R | 25286936 | 2R | 6877221..6877364 | 1115..972 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 6875997..6876119 | 1237..1115 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:04 has no hits.
BS26633.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:42:51 Download gff for
BS26633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RI | 55..1273 | 17..1235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:07 Download gff for
BS26633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 59..1277 | 17..1235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:58 Download gff for
BS26633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 59..1277 | 17..1235 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:58 Download gff for
BS26633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6875999..6876118 | 1116..1235 | 100 | <- | Minus |
| 2R | 6877221..6877362 | 974..1115 | 100 | <- | Minus |
| 2R | 6877427..6878358 | 42..973 | 100 | <- | Minus |
| 2R | 6878845..6878869 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:07 Download gff for
BS26633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2763504..2763623 | 1116..1235 | 100 | <- | Minus |
| arm_2R | 2764726..2764867 | 974..1115 | 100 | <- | Minus |
| arm_2R | 2764932..2765863 | 42..973 | 100 | <- | Minus |
| arm_2R | 2766350..2766374 | 17..41 | 100 | | Minus |
BS26633.pep Sequence
Translation from 16 to 1236
> BS26633.pep
MDYRLVPCGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFARRLALFSI
NVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASS
DPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLS
AAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAI
HFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAM
ALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVAL
KLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHK
AFIEVNEEGTEAAAATVWRVMAVAAFSRKHFIANHPFAFYVKTHYDLPIF
TGRYLG*
BS26633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PI | 406 | CG9453-PI | 1..406 | 1..406 | 2079 | 100 | Plus |
| Spn42Da-PB | 424 | CG9453-PB | 1..406 | 1..402 | 1897 | 93.1 | Plus |
| Spn42Da-PJ | 374 | CG9453-PJ | 1..374 | 33..406 | 1896 | 100 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 1..406 | 1..402 | 1881 | 92.4 | Plus |
| Spn42Da-PF | 411 | CG9453-PF | 1..407 | 1..403 | 1880 | 92.4 | Plus |
