BS26636.complete Sequence
2930 bp assembled on 2011-09-19
GenBank Submission: KX803912
> BS26636.complete
GAAGTTATCAGTCGACATGCTAGCCGAAGCATTGGGCTATGGCTACCTGC
TGGCCTACGTGATCTGCCTGCTCTGCTGGCCAGGAGAGGCGTATCCCGCC
AGCAGTAGCTACCGGGATCTGGATATATGCAATCATTGGGACGGAAGACG
TCACTTCCTGGAACTGGGAAGTCCAGCTGGAGAGGTGCACGCCAGGAATG
TGACTACTACTGCCTATAGAAGCTCGCCGCTGGTTTTTAAGAACGATGCA
GTGGCCGGGGATGTGTGGTACCAGTGCAGCCTGGAGCTGGTCACCTGTGC
CGAGTGCGTCATCCGAGTGGCCTTCACCTATGCCAACTTCTCCAAAAGTT
GCGGCAATACGGGTGGCAAGTCCAGCATGTGTCCCTGCGAGCATATCCAG
TTCTCGGAGCCGCCCTATGATTCCACCATTTCCGGCCAAGAGTTCTGTGG
AGATGGCAAGGTGTTTCGGAGCAAAACCAGGACACTGCAGTTGAAATTCT
TCTACAGAGCCAGCAATGCGCACGTGTTCTCCCTTCAATACTTCTCGGAA
CGCAACGTGCGGATAGTCAGTGGCTCCCCCAAGCAGTCTATTGTGGGCAA
TGGGAGTACAAAGTCCCAGCCACAAGTGATCTCCACGCCGTATTTCCCGA
TGGCATATCCACGCGACTATGGTATCGAACACATCCTCACCTGCGAGGCG
GACAACTGCCAGGTGCGTTTGGATTTTACCGACTTCCAGCTGGGCCTCAC
CTCCACCCTAGAGATCTTCGACTCCAATGGCCAGATGCTGGACTCCTATA
CGGGTGAGCACTTCCGTCCGCCGATCACGGTGAGCAGCGGCAAGTCTCTG
CTCCTGCAGTTTCGAGGAAATTCCGCCACCGGAGTGGGTTTTCGCGCGGA
GGTTAGCTTCGTATCCTCCAAGCAGCTCAAGGACGAGCGACTGGTGCCCT
ACACAGATTGCGGGGGAATGGTTACCGGACCTGGTGGCGCCATCACCATG
ATGAACATGATCGAAAATGCCACGGACGTGCGGCTGTTTGACTGCATCTG
GATTATAAAGCCCGGCAACAACTACATGATGATGAAAACCCACATCTCGT
TGAGAGTGGATGACTTCTACGGCATGGCCGCCAGATCTGAGCTCACAATA
CGGCAGGGCACCACCTCGGATGCCGTGGAGATCGAGAATGTGATGTGGCC
GAACAATGGGCTGAGCAAGGAGAGTCATGTGGCGCCCATCCTCAATGGCT
ACTACATTCGACTGCGTGGGGTATTCGGGATGTCCTCCAAGCTGGCCATC
GTCTACAGCGTGTTCAACTACTTGAATTGCTATATTGGCTCGGAGTTTCT
GTGCGGGAACAATCACTGCATATCCATTCGCCTCCACTGCGATGGCTTCG
ACCATTGTGGGGATGGCAGCGATGAGCCGGATTCCTGCGAGGAGGACTGG
GCACACCTGCATCACGATCGTCGCTGGTACTCTCACAAGCCCAACTATTA
TTTCCCCAAGATAGACCAGTATCCAGATCTTAAGACGGCCACGGGAATCT
TTATCATCAGCACACTTGGCATATTTGGTGTGCTGTCCGGCTGGATGGTG
ATCCTGTACAGGATGGGGGTTAGAGCACGACACCAACGTGAGCTTCAAAG
CCACCTGCAGACGATCAGTGAGCTGTTGGATCGCCAGGACGAGGATCGCA
CGCCCGATGAGCCACCCAGCTACGAGGCACCACCCGATTACGAGGAGGTC
ATCAAGGTAGGAATGCAACAGGAGCTACGGGAGCCACGTCGCCAGAGACG
GGCCCGTCGAGCTCCGCCTAGAGATCGGAGCTGCAGTCGCGCCGCAAGCA
ATTGCACCGTGCAATCGGTACTCCCACTGCATCGCAGCTGCACCCTGGAA
AGGGATCAAGAACAGCCCAGTACCTCGGCGGCGGCAATGACCCATGCGGT
GGCTGCCACGGATACAACGGAGGATGCCGAACACGTCCAGACGATGGCCC
AGCGAATGCTCCTCGCCACGGCTATTTGTGGCACTGCAGGCACGTCTCTC
CCGGCAGCAAAGGAGTCAGGGCAGCGGGTCCAATCCGTGGGGATTTCAAC
GAGCCCGTCATCGTTATCCGCTGGGGGTGAACTACCCACAGCAGGTGGGT
CAGCCACAACGCCCGGCAGCACGGCAGATGAGTGCACCCAGGGAGGCGAC
TCACTTAGCATTTCACTCACTCTAGGCTTGCCCTCCACCACGGCAGAGAG
TCCTGTGACAACCGACCAGAACCAATTGCAGAAACAAAGTCCGGAGCAGA
CAATCAGCAATTGCACGGAGCACACCTTCCTAAAGAGATCGTGGTTGGTG
GTGCAACAGGTTCCACCTGGCAGGGGTTACCGTGTCCGGAGGCTGCGACA
TACCTTCTCCTCTCCTGAAGCATTCACTAGCGATGAGCTGCATCTGCCGT
ACCCGGATTTCCTGAGCTACGGCACTAATCTTCCACATGAACGGAGCAGT
AGTAATTTCGGATCCGAGTTGTCGAGGGACCCATCGAGTTATAGTGTGGG
CAAACGAGCTCGCTTGACGCCCGAGGACACAAGTGGATCGGAGACCATTA
CCCAGGAGATGGAGCAATCCAACCAGACACTCCAGTCCCATGTGATAGTG
GAAAGTCACCCGAATCACAGCGAAAGTGAGAGCGAAGCGGAGCAGCAGGT
GTCCTGCTTTGGAGCCGTAGCCCAGCGGCCCAAGAGGCGTCATCGGGGTC
ATGTGAGGAGCCGATCCTTTAGCAATGCCAGAGGTGGCAGTGCCGGAAGG
AGGCGTCTCATGCAGCGCAGCTCGTCGGCCGATCTTTTGATGAACTACGC
GACAATGGCGGTATCGACGCCACAAAAAACGAGCGAGGCAATGCAGCGAT
TGTTCTTCATCTGAAAGCTTTCTAGACCAT
BS26636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-RA | 2898 | CG17352-PA | 1..2898 | 17..2914 | 14490 | 100 | Plus |
| CG17352-RB | 2223 | CG17352-PB | 1..2223 | 17..2225 | 10870 | 99.4 | Plus |
| CG17352-RC | 2055 | CG17352-PC | 1..2015 | 17..2031 | 10075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-RA | 3160 | CG17352-RA | 89..2986 | 17..2914 | 14490 | 100 | Plus |
| CG17352-RB | 3174 | CG17352-RB | 89..3000 | 17..2914 | 14315 | 99.5 | Plus |
| CG17352-RE | 3223 | CG17352-RE | 687..3049 | 552..2914 | 11815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8352529..8353413 | 2914..2030 | 4425 | 100 | Minus |
| 3L | 28110227 | 3L | 8353478..8354183 | 2031..1326 | 3530 | 100 | Minus |
| 3L | 28110227 | 3L | 8355144..8355548 | 956..552 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 8354242..8354612 | 1325..955 | 1855 | 100 | Minus |
| 3L | 28110227 | 3L | 8355611..8355942 | 552..221 | 1660 | 100 | Minus |
| 3L | 28110227 | 3L | 8356005..8356208 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:45:57 has no hits.
BS26636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:28 Download gff for
BS26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RD | 89..623 | 17..551 | 100 | -> | Plus |
| CG17352-RD | 687..3048 | 552..2913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:02 Download gff for
BS26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RA | 89..2985 | 17..2913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:13 Download gff for
BS26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RA | 89..2985 | 17..2913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:13 Download gff for
BS26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8355612..8355942 | 221..551 | 100 | <- | Minus |
| 3L | 8353479..8354183 | 1326..2030 | 100 | <- | Minus |
| 3L | 8352530..8353412 | 2031..2913 | 100 | <- | Minus |
| 3L | 8354242..8354610 | 957..1325 | 100 | <- | Minus |
| 3L | 8355144..8355548 | 552..956 | 100 | <- | Minus |
| 3L | 8356005..8356208 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:02 Download gff for
BS26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8348712..8349042 | 221..551 | 100 | <- | Minus |
| arm_3L | 8349105..8349308 | 17..220 | 100 | | Minus |
| arm_3L | 8345630..8346512 | 2031..2913 | 100 | <- | Minus |
| arm_3L | 8346579..8347283 | 1326..2030 | 100 | <- | Minus |
| arm_3L | 8347342..8347710 | 957..1325 | 100 | <- | Minus |
| arm_3L | 8348244..8348648 | 552..956 | 100 | <- | Minus |
BS26636.pep Sequence
Translation from 16 to 2913
> BS26636.pep
MLAEALGYGYLLAYVICLLCWPGEAYPASSSYRDLDICNHWDGRRHFLEL
GSPAGEVHARNVTTTAYRSSPLVFKNDAVAGDVWYQCSLELVTCAECVIR
VAFTYANFSKSCGNTGGKSSMCPCEHIQFSEPPYDSTISGQEFCGDGKVF
RSKTRTLQLKFFYRASNAHVFSLQYFSERNVRIVSGSPKQSIVGNGSTKS
QPQVISTPYFPMAYPRDYGIEHILTCEADNCQVRLDFTDFQLGLTSTLEI
FDSNGQMLDSYTGEHFRPPITVSSGKSLLLQFRGNSATGVGFRAEVSFVS
SKQLKDERLVPYTDCGGMVTGPGGAITMMNMIENATDVRLFDCIWIIKPG
NNYMMMKTHISLRVDDFYGMAARSELTIRQGTTSDAVEIENVMWPNNGLS
KESHVAPILNGYYIRLRGVFGMSSKLAIVYSVFNYLNCYIGSEFLCGNNH
CISIRLHCDGFDHCGDGSDEPDSCEEDWAHLHHDRRWYSHKPNYYFPKID
QYPDLKTATGIFIISTLGIFGVLSGWMVILYRMGVRARHQRELQSHLQTI
SELLDRQDEDRTPDEPPSYEAPPDYEEVIKVGMQQELREPRRQRRARRAP
PRDRSCSRAASNCTVQSVLPLHRSCTLERDQEQPSTSAAAMTHAVAATDT
TEDAEHVQTMAQRMLLATAICGTAGTSLPAAKESGQRVQSVGISTSPSSL
SAGGELPTAGGSATTPGSTADECTQGGDSLSISLTLGLPSTTAESPVTTD
QNQLQKQSPEQTISNCTEHTFLKRSWLVVQQVPPGRGYRVRRLRHTFSSP
EAFTSDELHLPYPDFLSYGTNLPHERSSSNFGSELSRDPSSYSVGKRARL
TPEDTSGSETITQEMEQSNQTLQSHVIVESHPNHSESESEAEQQVSCFGA
VAQRPKRRHRGHVRSRSFSNARGGSAGRRRLMQRSSSADLLMNYATMAVS
TPQKTSEAMQRLFFI*
BS26636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-PA | 965 | CG17352-PA | 1..965 | 1..965 | 5098 | 100 | Plus |
| CG17352-PB | 740 | CG17352-PB | 1..692 | 1..692 | 3609 | 97.8 | Plus |
| CG17352-PC | 684 | CG17352-PC | 1..672 | 1..672 | 3604 | 100 | Plus |
| CG17352-PE | 181 | CG17352-PE | 1..181 | 1..181 | 980 | 98.9 | Plus |
