BS26639.complete Sequence
1244 bp assembled on 2011-08-29
GenBank Submission: KX801244
> BS26639.complete
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGTGGCGATTAAATCCGA
AATTTCTAAATAACACCAAGTTTCACTTTCGCGATATTATCTTCTACAAT
CGAGTTCCCAAGACGGGCAGTGAAACGCTGATCGAGTTGATGATTCAACT
TGGAAAAAAGAACGACTTTCAGAACGAAAGGTCTCCGTTTTCGAAACCCA
CTGGAATGTACTGGGATGTGAAGCGGCAAAAGCAGGAAGCCACGCGCATC
CTGGAGTTGCAGGAGGAACCAGCCTTTGTCTATGTAGAGCACATGAACTA
CATGAACATTCGCCCCTTTCACCTACCCCAACCAATCTACATCAACATGA
TTCGAGACCCCGTAGAACGAGTGATCAGCTGGTTCTACTATAAACGCACT
CCCTGGAACTCTGTCAAAATGTACAAGGTGACGGGGAAATTTCAGAATCG
CACCCACTACACCAAGAACTTTGAGGAATGCGTCCTTACACACGATCCGG
AATGTCGATATGACTACGGACTTCTGTTCAAGGACGATTCTGCCGATCAC
AAGCGTCAGAGCCTGTTCTTCTGCGGACACTCCCCCATTTGCGAACCCTT
CAATACACCGGCGGCAATTGCGAGGGCCAAGCAAAACGTAGAGCGAGATT
TCTCAGTGGTTGGTTCCTGGGAGGATACGAATGTCACTTTGACAGTGCTC
GAGCACTATATACCGCGATTCTTCAAGGGCACTATGGAGCTGTACTATGA
ACCCAATATCGGTCTGGCCTTTAAGAAGGCGAATATCAACCCCTGGAAGC
CGAAAATTAGCGAGCGAATCAAGCAAATAATGCGGGCTAACTTCACTCAG
GAATACGAATTTTATTACTTTTGCAAGCAGCGCTTGTATCGCCAATACTT
TGCAATAAATAAGCAATTGCACTTCTGAAAGCTTTCTAGACCAT
BS26639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pip-RC | 1212 | CG9614-PC | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| pip-RF | 1194 | CG9614-PF | 1..318 | 17..334 | 1590 | 100 | Plus |
| pip-RM | 879 | CG9614-PM | 1..317 | 17..333 | 1585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pip-RC | 1397 | CG9614-RC | 180..1392 | 17..1229 | 6065 | 100 | Plus |
| pip-RF | 1441 | CG9614-RF | 180..497 | 17..334 | 1590 | 100 | Plus |
| pip-RM | 2975 | CG9614-RM | 180..496 | 17..333 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19308756..19309076 | 649..329 | 1605 | 100 | Minus |
| 3L | 28110227 | 3L | 19308455..19308700 | 894..649 | 1230 | 100 | Minus |
| 3L | 28110227 | 3L | 19307999..19308179 | 1229..1049 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 19318784..19318951 | 272..105 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 19308241..19308395 | 1049..895 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 19337342..19337430 | 105..17 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 19313156..19313214 | 331..273 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:10 has no hits.
BS26639.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:42:52 Download gff for
BS26639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RC | 170..1380 | 17..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:43 Download gff for
BS26639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RC | 180..1390 | 17..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:32 Download gff for
BS26639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RC | 180..1390 | 17..1227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:32 Download gff for
BS26639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19308001..19308178 | 1050..1227 | 100 | <- | Minus |
| 3L | 19308241..19308395 | 895..1049 | 100 | <- | Minus |
| 3L | 19308455..19308699 | 650..894 | 100 | <- | Minus |
| 3L | 19308756..19309073 | 332..649 | 100 | <- | Minus |
| 3L | 19313156..19313214 | 273..331 | 100 | <- | Minus |
| 3L | 19318784..19318950 | 106..272 | 100 | <- | Minus |
| 3L | 19337342..19337430 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:43 Download gff for
BS26639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19301101..19301278 | 1050..1227 | 100 | <- | Minus |
| arm_3L | 19301341..19301495 | 895..1049 | 100 | <- | Minus |
| arm_3L | 19301555..19301799 | 650..894 | 100 | <- | Minus |
| arm_3L | 19301856..19302173 | 332..649 | 100 | <- | Minus |
| arm_3L | 19306256..19306314 | 273..331 | 100 | <- | Minus |
| arm_3L | 19311884..19312050 | 106..272 | 100 | <- | Minus |
| arm_3L | 19330442..19330530 | 17..105 | 100 | | Minus |
BS26639.pep Sequence
Translation from 16 to 1227
> BS26639.pep
MSLNAERSYKMKLRDVENAFKYRRIPYPKRSVELIALLAISCTFFLFMHT
NKLNSRLKEMEVKLQPSEFSALGLTGNHISGHDAGKHDDINTLHGTYQYL
KSTGQLWRLNPKFLNNTKFHFRDIIFYNRVPKTGSETLIELMIQLGKKND
FQNERSPFSKPTGMYWDVKRQKQEATRILELQEEPAFVYVEHMNYMNIRP
FHLPQPIYINMIRDPVERVISWFYYKRTPWNSVKMYKVTGKFQNRTHYTK
NFEECVLTHDPECRYDYGLLFKDDSADHKRQSLFFCGHSPICEPFNTPAA
IARAKQNVERDFSVVGSWEDTNVTLTVLEHYIPRFFKGTMELYYEPNIGL
AFKKANINPWKPKISERIKQIMRANFTQEYEFYYFCKQRLYRQYFAINKQ
LHF*
BS26639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pip-PC | 403 | CG9614-PC | 1..403 | 1..403 | 2182 | 100 | Plus |
| pip-PG | 407 | CG9614-PG | 1..396 | 1..398 | 1247 | 61.1 | Plus |
| pip-PA | 413 | CG9614-PA | 1..393 | 1..396 | 1185 | 59.8 | Plus |
| pip-PD | 418 | CG9614-PD | 1..393 | 1..397 | 1177 | 59.1 | Plus |
| pip-PH | 405 | CG9614-PH | 1..396 | 1..399 | 1156 | 56.9 | Plus |
