BS26641.complete Sequence
1232 bp assembled on 2011-08-29
GenBank Submission: KX804404
> BS26641.complete
GAAGTTATCAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGC
CCATTATTGTTAAGCAACTGCAAAAAAATGCAGCCCAAGCAGGTGTTTCG
AAAACCAACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGCCCTT
CAAGCTGCACCGCCTGGACGAAGGACCCGCCACGGAAGTGAAGCTGACCA
AGGATCAGGCCCTTAAGTACTACACACAGATGCAGACGATCCGTCGGTTG
GAGACGGCCGCCGGTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTG
TCATCTGTATTCCGGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGA
TGCGGGATGTGGACAACATCATATCGGCGTACCGTGTCCACGGATGGACC
TACCTGATGGGCGTCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGT
CCAGGGTGGCTGTGCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCAC
CGAACTTCTACGGAGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGC
GCCGGCGTTGGCTTGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCT
GGCCCTCTACGGTGATGGTGCCGCCAATCAGGGACAGGTGTTCGAGGCCT
ACAACATGGCCTACCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAAC
AACAACTACGGAATGGGTACCAGTTCTGAGCGTGCTTCCTGCAACACTGA
TTACTATACCCGCGGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGG
ATGTGCTGGCCGTGCGCAGCGCCACCGAGTTCGCCATCAACTATGTGAAC
ACTCACGGACCTTTGGTGATGGAGACGAACACGTACCGATACTCTGGACA
CTCCATGTCCGATCCGGGCACATCGTACCGCACACGCGAGGAGATCCAGG
AGGTGCGCCAGAAGCGTGATCCCATCACCTCCTTCAAGGAGCTGTGCATC
GAGCTGGGTCTGATTACCACCGATGAAGTTAAGGCCATCGATCTGAAGGT
ACGCAAGGAGGTCGACGAGGCCACCGCCTTCGCCAAGTCCGATGCCGAGC
TGGGCGTGAGCCACCTCTGGACGGACGTGTACTCCAACAATCTGGAGCCC
AAGCTGCGCGGCACCATCGCCTACGATATTGATCACATCCAGGAGCGCAA
GGGCGTCAATCACTAAAAGCTTTCTAGACCAT
BS26641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RD | 1200 | CG7010-PD | 1..1200 | 17..1216 | 5910 | 99.5 | Plus |
| l(1)G0334-RA | 1200 | CG7010-PA | 1..1200 | 17..1216 | 5910 | 99.5 | Plus |
| l(1)G0334-RC | 1332 | CG7010-PC | 193..1332 | 77..1216 | 5610 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RD | 1667 | CG7010-RD | 115..1314 | 17..1216 | 5910 | 99.5 | Plus |
| l(1)G0334-RA | 1760 | CG7010-RA | 208..1407 | 17..1216 | 5910 | 99.5 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 500..1639 | 77..1216 | 5610 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4703554..4704120 | 145..711 | 2760 | 99.1 | Plus |
| X | 23542271 | X | 4704194..4704518 | 710..1034 | 1610 | 99.7 | Plus |
| X | 23542271 | X | 4704586..4704770 | 1032..1216 | 925 | 100 | Plus |
| X | 23542271 | X | 4702824..4702892 | 77..145 | 345 | 100 | Plus |
| X | 23542271 | X | 4702532..4702591 | 17..76 | 300 | 100 | Plus |
| X | 23542271 | X | 4706325..4706790 | 466..931 | 295 | 71.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:57 has no hits.
BS26641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 17:37:18 Download gff for
BS26641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RD | 120..1312 | 22..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:24 Download gff for
BS26641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 213..1405 | 22..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:26 Download gff for
BS26641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 213..1405 | 22..1214 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:26 Download gff for
BS26641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4702537..4702591 | 22..76 | 100 | -> | Plus |
| X | 4702824..4702892 | 77..145 | 100 | -> | Plus |
| X | 4703555..4704119 | 146..710 | 99 | -> | Plus |
| X | 4704195..4704517 | 711..1033 | 99 | -> | Plus |
| X | 4704588..4704768 | 1034..1214 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:24 Download gff for
BS26641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4596570..4596624 | 22..76 | 100 | -> | Plus |
| arm_X | 4596857..4596925 | 77..145 | 100 | -> | Plus |
| arm_X | 4597588..4598152 | 146..710 | 99 | -> | Plus |
| arm_X | 4598228..4598550 | 711..1033 | 99 | -> | Plus |
| arm_X | 4598621..4598801 | 1034..1214 | 100 | | Plus |
BS26641.pep Sequence
Translation from 16 to 1215
> BS26641.pep
MLRTLSRVSELPIIVKQLQKNAAQAGVSKTNNYATEATVQVNRPFKLHRL
DEGPATEVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSG
QEACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCA
RGKGGSMHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGD
GAANQGQVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRG
DALPGIWVDGMDVLAVRSATEFAINYVNTHGPLVMETNTYRYSGHSMSDP
GTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVD
EATAFAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*
BS26641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-PD | 399 | CG7010-PD | 1..399 | 1..399 | 2097 | 100 | Plus |
| l(1)G0334-PA | 399 | CG7010-PA | 1..399 | 1..399 | 2097 | 100 | Plus |
| l(1)G0334-PC | 443 | CG7010-PC | 1..443 | 1..399 | 2042 | 90.1 | Plus |
| l(1)G0334-PB | 328 | CG7010-PB | 1..328 | 72..399 | 1744 | 100 | Plus |
| CG7024-PA | 479 | CG7024-PA | 43..390 | 45..392 | 1142 | 59.8 | Plus |
