BS26649.complete Sequence
1961 bp assembled on 2011-09-19
GenBank Submission: KX802762
> BS26649.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCA
TGCTACGGATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGG
AGGATGAATTCACAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAAC
GGATTCACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCAC
CGTTAAGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGA
CTGAAGTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATG
ATCATACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGT
CATCGAACGGGCCCTCTCGGAGAATGTGGACATATACACGGACTACATCG
GCGGCGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTC
TCGCTGAACCGCGTCTTCTACGACGAGCGCTGGTCGAAGAACCGCTGCAT
CACCAGCATGGACTGGTCCACCCACTTCCCCGAGCTGGTGGTGGGCTCGT
ACCACAACAACGAGGAGAGTCCGAACGAGCCGGACGGCGTGGTGATGGTG
TGGAACACCAAGTTCAAGAAGAGCACGCCCGAGGACGTCTTCCACTGCCA
GAGCGCGGTGATGTCCACCTGCTTTGCCAAGTTCAATCCCAACCTGATCC
TCGGCGGCACCTATTCGGGCCAGATTGTGCTGTGGGACAATCGCGTGCAG
AAGCGCACGCCCATACAGCGCACGCCCCTCAGTGCCGCGGCGCACACGCA
TCCCGTCTACTGCCTCCAAATGGTGGGCACCCAGAATGCGCACAACGTCA
TCTCCATATCCTCGGACGGCAAGCTGTGCTCCTGGTCGCTGGACATGCTG
TCGCAACCACAGGACACGCTGGAGCTGCAGCAGCGCCAGTCGAAGGCCAT
TGCCATTACATCGATGGCCTTCCCGGCCAACGAGATCAATAGCCTGGTGA
TGGGCAGTGAGGACGGCTACGTCTACTCCGCCTCGCGCCACGGCCTGCGC
TCCGGGGTCAACGAGGTTTACGAACGCCATCTTGGCCCTATCACTGGCAT
ATCCACGCACTACAACCAGCTGTCGCCGGACTTTGGCCACCTCTTCCTAA
CCTCGTCCATTGACTGGACCATCAAGCTCTGGTCGCTAAAGGACACAAAG
CCGCTGTACTCCTTTGAGGACAACTCCGACTACGTGATGGACGTCGCCTG
GTCGCCCGTGCATCCCGCACTCTTCGCCGCCGTCGACGGCAGCGGCCGCC
TGGATCTGTGGAACCTCAACCAAGACACGGAGGTGCCGACCGCCTCGATT
GTCGTGGCGGGAGCACCAGCCCTTAACCGCGTCTCTTGGACCCCATCCGG
TCTGCACGTGTGCATCGGCGACGAGGCCGGCAAGCTGTACGTGTACGACG
TGGCCGAGAACCTGGCGCAGCCATCGCGCGACGAATGGTCGCGGTTCAAC
ACCCATCTTAGCGAGATCAAGATGAACCAGAGCGATGAGGTCTAGAAGCT
TTCTAGACCAT
BS26649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RE | 1929 | CG18000-PE | 1..1929 | 17..1945 | 9645 | 100 | Plus |
| sw-RD | 1932 | CG18000-PD | 1..1932 | 17..1945 | 9580 | 99.8 | Plus |
| sw-RL | 1932 | CG18000-PL | 1..1932 | 17..1945 | 9580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RE | 3070 | CG18000-RE | 384..2312 | 17..1945 | 9645 | 100 | Plus |
| sw-RD | 2889 | CG18000-RD | 200..2131 | 17..1945 | 9580 | 99.8 | Plus |
| sw-RL | 3032 | CG18000-RL | 343..2274 | 17..1945 | 9580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20229139..20230063 | 1592..668 | 4625 | 100 | Minus |
| X | 23542271 | X | 20205922..20206846 | 1592..668 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 20174931..20175855 | 1592..668 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20190482..20191406 | 1592..668 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20198198..20199122 | 1592..668 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20182758..20183682 | 1592..668 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20213615..20214507 | 1560..668 | 4450 | 99.9 | Minus |
| X | 23542271 | X | 20221297..20222189 | 1560..668 | 4450 | 99.9 | Minus |
| X | 23542271 | X | 20182338..20182693 | 1945..1590 | 1780 | 100 | Minus |
| X | 23542271 | X | 20228719..20229074 | 1945..1590 | 1780 | 100 | Minus |
| X | 23542271 | X | 20220879..20221226 | 1945..1598 | 1695 | 99.1 | Minus |
| X | 23542271 | X | 20190123..20190417 | 1884..1590 | 1430 | 99 | Minus |
| X | 23542271 | X | 20197839..20198133 | 1884..1590 | 1430 | 99 | Minus |
| X | 23542271 | X | 20205563..20205857 | 1884..1590 | 1430 | 99 | Minus |
| X | 23542271 | X | 20213258..20213544 | 1884..1598 | 1390 | 99 | Minus |
| X | 23542271 | X | 20235508..20235663 | 172..17 | 780 | 100 | Minus |
| X | 23542271 | X | 20191789..20191943 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20176238..20176392 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20184060..20184214 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20199505..20199659 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20207229..20207383 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20214885..20215039 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20222567..20222721 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20230441..20230595 | 668..514 | 775 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 318..172 | 735 | 100 | Minus |
| X | 23542271 | X | 20174589..20174768 | 1945..1760 | 655 | 91.4 | Minus |
| X | 23542271 | X | 20234775..20234904 | 446..317 | 650 | 100 | Minus |
| X | 23542271 | X | 20201591..20201720 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20178270..20178399 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20232117..20232165 | 515..467 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:39:29 has no hits.
BS26649.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:13 Download gff for
BS26649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RJ | 384..812 | 17..446 | 99 | -> | Plus |
| sw-RJ | 877..2375 | 447..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:49 Download gff for
BS26649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RE | 384..2312 | 17..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:32 Download gff for
BS26649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RE | 384..2312 | 17..1945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:32 Download gff for
BS26649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20235288..20235434 | 172..318 | 100 | <- | Minus |
| X | 20235509..20235663 | 17..171 | 100 | | Minus |
| X | 20228719..20229072 | 1592..1945 | 100 | <- | Minus |
| X | 20229140..20230062 | 669..1591 | 100 | <- | Minus |
| X | 20230441..20230593 | 516..668 | 100 | <- | Minus |
| X | 20232117..20232164 | 468..515 | 100 | <- | Minus |
| X | 20233423..20233443 | 447..467 | 100 | <- | Minus |
| X | 20234775..20234902 | 319..446 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:49 Download gff for
BS26649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20099793..20100146 | 1592..1945 | 100 | <- | Minus |
| arm_X | 20100214..20101136 | 669..1591 | 100 | <- | Minus |
| arm_X | 20101515..20101667 | 516..668 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 468..515 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 447..467 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 319..446 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 172..318 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 17..171 | 100 | | Minus |
BS26649.pep Sequence
Translation from 16 to 1944
> BS26649.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYY
DEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVA
PAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERAL
SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW
STHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMS
TCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCL
QMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSM
AFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYN
QLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHP
ALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCI
GDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV*
BS26649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-PE | 642 | CG18000-PE | 1..642 | 1..642 | 3363 | 100 | Plus |
| sw-PD | 643 | CG18000-PD | 1..643 | 1..642 | 3351 | 99.8 | Plus |
| sw-PL | 643 | CG18000-PL | 1..643 | 1..642 | 3351 | 99.8 | Plus |
| sw-PM | 643 | CG18000-PM | 1..643 | 1..642 | 3351 | 99.8 | Plus |
| sw-PF | 650 | CG18000-PF | 1..650 | 1..642 | 3344 | 98.8 | Plus |
