BS26693.complete Sequence
3095 bp assembled on 2011-10-18
GenBank Submission: KX803544
> BS26693.complete
GAAGTTATCAGTCGACATGGAAGACGGTCACTCGAAAACCGTCGAACAGT
CCCTCAACTTCTTCGGAACGGACCCCGAGCGCGGCTTAACCCTCGACCAG
ATCAAGGCTAACCAGAAGAAATACGGACCCAATGAGTTGCCGACTGAGGA
AGGAAAGAGCATCTGGCAGCTGGTCTTGGAGCAGTTCGACGATCTGCTGG
TGAAGATTCTGCTGTTGGCAGCCATCATCTCATTTGTTCTCGCCCTGTTT
GAGGAACACGAGGAAACGTTCACTGCATTTGTAGAGCCCCTAGTTATTTT
ACTTATCCTGATAGCCAACGCCGTGGTGGGAGTATGGCAGGAGCGTAACG
CCGAGTCGGCCATTGAGGCCCTCAAGGAGTACGAGCCTGAGATGGGCAAG
GTGGTGCGCCAGGACAAGTCCGGCATCCAGAAGGTGCGCGCGAAAGAGAT
CGTGCCCGGTGACCTGGTTGAGGTGTCTGTCGGTGACAAGATCCCTGCCG
ATATCCGTATCACCCACATCTACTCGACCACCCTTAGGATCGATCAGTCC
ATCCTCACCGGTGAGTCGGTCTCCGTCATCAAGCACACCGATGCCATCCC
CGATCCCCGCGCCGTCAACCAGGACAAGAAGAACATCCTGTTCTCCGGCA
CCAACGTCGCAGCCGGCAAGGCCCGTGGCGTCGTCATCGGCACTGGCCTG
AGCACCGCCATCGGCAAGATCCGTACTGAGATGTCCGAGACCGAGGAGAT
CAAGACCCCCCTGCAGCAGAAACTGGACGAGTTCGGTGAGCAGCTGTCCA
AGGTCATTTCCGTCATTTGCGTTGCCGTGTGGGCCATCAACATCGGCCAC
TTCAACGACCCCGCTCACGGAGGCTCCTGGATCAAGGGTGCCATCTACTA
CTTCAAGATCGCCGTCGCTCTGGCTGTGGCTGCCATCCCCGAGGGTCTGC
CCGCCGTCATCACCACCTGTCTGGCTCTGGGCACCCGCCGCATGGCCAAG
AAGAATGCCATCGTCCGCTCCCTGCCCTCCGTGGAGACCCTGGGCTGCAC
ATCTGTCATCTGCTCTGATAAGACCGGCACACTCACCACCAACCAAATGT
CCGTTTCCCGCATGTTCATCTTCGACAAGGTTGAAGGCAACGACAGCAGC
TTCCTCGAATTCGAGATGACCGGCTCCACCTACGAGCCCATCGGCGAGGT
CTTCCTCAACGGTCAGCGCATCAAGGCTGCTGACTACGATACCCTGCAGG
AACTGTCCACCATCTGCATCATGTGCAACGACTCCGCCATTGATTACAAT
GAGTTCAAGCAGGCCTTCGAGAAGGTCGGCGAAGCCACTGAGACCGCCCT
GATTGTGCTGGCTGAGAAACTGAACAGCTTCAGCGTGAACAAGTCTGGCC
TGGACCGCCGCTCGGCTGCCATCGCCTGCCGCGGTGAGATCGAAACCAAG
TGGAAGAAGGAATTCACCCTGGAGTTCTCTCGCGATCGTAAATCCATGTC
CTCGTACTGCACCCCCCTGAAGGCTTCCCGCCTGGGCACTGGCCCCAAGT
TGTTCGTGAAGGGCGCCCCCGAGGGTGTTCTAGAGCGTTGCACACACGCC
CGCGTTGGCACCACCAAGGTTCCTCTGACCTCGGCCCTGAAGGCCAAGAT
CCTCGCCCTGACCGGCCAGTACGGTACTGGACGCGACACCCTTCGCTGCC
TGGCTCTGGCCGTTGCCGATAGCCCCATGAAGCCCGACGAGATGGATCTG
GGCGACTCCACCAAGTTCTACCAGTATGAGGTTAACCTGACCTTCGTCGG
TGTTGTGGGCATGTTGGATCCCCCCCGTAAGGAAGTTTTCGATTCCATTG
TCCGCTGCCGTGCCGCCGGTATTCGTGTTATTGTGATCACCGGCGACAAC
AAGGCCACTGCCGAGGCTATCTGCCGCAGAATCGGTGTATTCGCCGAGGA
TGAGGACACCACTGGCAAGTCCTACTCGGGTCGTGAATTCGACGACCTTT
CCCCCACCGAACAAAAGGCTGCCGTCGCCCGCTCCCGCCTCTTCTCCCGC
GTGGAGCCCCAGCACAAGTCCAAGATTGTTGAGTTCCTGCAGAGCATGAA
CGAAATCTCCGCTATGACTGGTGATGGTGTGAACGACGCCCCCGCCCTGA
AGAAGGCTGAGATCGGTATTGCCATGGGCTCTGGTACCGCCGTCGCCAAG
TCTGCCGCCGAAATGGTGCTGGCTGACGACAACTTCTCCTCCATCGTGTC
TGCCGTTGAAGAAGGTCGCGCTATCTACAACAACATGAAACAGTTCATCC
GCTACCTCATCTCTTCGAACATTGGTGAGGTCGTCTCCATCTTCCTTACT
GCTGCCCTTGGCCTGCCCGAGGCTCTGATTCCCGTCCAGCTGCTCTGGGT
TAACTTGGTTACTGATGGTCTCCCAGCCACCGCTCTGGGCTTCAACCCCC
CTGATCTGGATATCATGGAGAAGCCCCCCAGGAAGGCCGATGAGGGTCTC
ATTTCCGGATGGTTGTTCTTCCGTTACATGGCTATTGGATTCTATGTCGG
CGCTGCCACCGTCGGTGCCGCCGCCTGGTGGTTCGTGTTCTCTGATGAGG
GACCCAAACTGTCCTACTGGCAGCTGACCCACCATCTGTCCTGCTTGGGC
GGTGGCGACGAGTTCAAGGGCGTTGACTGCAAGATCTTCAGCGACCCCCA
TGCGATGACCATGGCTCTGTCCGTGCTGGTGACAATCGAAATGTTGAACG
CAATGAACAGCTTGTCCGAGAACCAGTCGCTGATTACCATGCCCCCATGG
TGCAACCTGTGGCTGATTGGATCAATGGCACTCTCCTTCACTCTTCACTT
TGTTATTCTTTACGTCGATGTCCTCTCCACCGTCTTCCAAGTGACACCGT
TGTCTGCAGAAGAATGGATAACTGTGATGAAATTCTCAATTCCTGTAGTT
TTATTAGATGAGACATTGAAGTTTGTTGCTAGAAAAATCGCAGATGGTGA
GAGTCCTATATATAAGATGCATGGGATTGTGTTAATGTGGGCTGTCTTCT
TTGGCCTGCTGTACGCTATGATGCTTTAAAAGCTTTCTAGACCAT
BS26693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ca-P60A-RF | 3063 | CG3725-PF | 1..3063 | 17..3079 | 15315 | 100 | Plus |
| Ca-P60A-RH | 3063 | CG3725-PH | 1..3063 | 17..3079 | 15315 | 100 | Plus |
| Ca-P60A-RC | 3063 | CG3725-PC | 1..3063 | 17..3079 | 15315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ca-P60A-RF | 3839 | CG3725-RF | 661..3723 | 17..3079 | 15315 | 100 | Plus |
| Ca-P60A-RH | 5028 | CG3725-RH | 217..3279 | 17..3079 | 15315 | 100 | Plus |
| Ca-P60A-RC | 3395 | CG3725-RC | 217..3279 | 17..3079 | 15315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23930156..23932329 | 2409..236 | 10870 | 100 | Minus |
| 2R | 25286936 | 2R | 23929682..23929919 | 2760..2523 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 23929231..23929431 | 3079..2879 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 23929500..23929622 | 2878..2756 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 23932667..23932784 | 134..17 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 23929983..23930099 | 2523..2407 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 23932404..23932490 | 237..151 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 20964895..20964981 | 1029..1115 | 195 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:20:30 has no hits.
BS26693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-18 10:25:37 Download gff for
BS26693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RD | 99..3159 | 17..3077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:49 Download gff for
BS26693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RC | 217..3277 | 17..3077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:09 Download gff for
BS26693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RC | 217..3277 | 17..3077 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:09 Download gff for
BS26693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23929233..23929431 | 2879..3077 | 100 | <- | Minus |
| 2R | 23929500..23929617 | 2761..2878 | 100 | <- | Minus |
| 2R | 23929682..23929918 | 2524..2760 | 100 | <- | Minus |
| 2R | 23929983..23930098 | 2408..2523 | 100 | <- | Minus |
| 2R | 23930158..23932329 | 236..2407 | 100 | <- | Minus |
| 2R | 23932406..23932488 | 153..235 | 100 | <- | Minus |
| 2R | 23932574..23932591 | 135..152 | 100 | <- | Minus |
| 2R | 23932667..23932784 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:49 Download gff for
BS26693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19816756..19816954 | 2879..3077 | 100 | <- | Minus |
| arm_2R | 19817023..19817140 | 2761..2878 | 100 | <- | Minus |
| arm_2R | 19817205..19817441 | 2524..2760 | 100 | <- | Minus |
| arm_2R | 19817506..19817621 | 2408..2523 | 100 | <- | Minus |
| arm_2R | 19817681..19819852 | 236..2407 | 100 | <- | Minus |
| arm_2R | 19819929..19820011 | 153..235 | 100 | <- | Minus |
| arm_2R | 19820097..19820114 | 135..152 | 100 | <- | Minus |
| arm_2R | 19820190..19820307 | 17..134 | 100 | | Minus |
BS26693.pep Sequence
Translation from 16 to 3078
> BS26693.pep
MEDGHSKTVEQSLNFFGTDPERGLTLDQIKANQKKYGPNELPTEEGKSIW
QLVLEQFDDLLVKILLLAAIISFVLALFEEHEETFTAFVEPLVILLILIA
NAVVGVWQERNAESAIEALKEYEPEMGKVVRQDKSGIQKVRAKEIVPGDL
VEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAIPDPRAV
NQDKKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQ
QKLDEFGEQLSKVISVICVAVWAINIGHFNDPAHGGSWIKGAIYYFKIAV
ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS
DKTGTLTTNQMSVSRMFIFDKVEGNDSSFLEFEMTGSTYEPIGEVFLNGQ
RIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGEATETALIVLAE
KLNSFSVNKSGLDRRSAAIACRGEIETKWKKEFTLEFSRDRKSMSSYCTP
LKASRLGTGPKLFVKGAPEGVLERCTHARVGTTKVPLTSALKAKILALTG
QYGTGRDTLRCLALAVADSPMKPDEMDLGDSTKFYQYEVNLTFVGVVGML
DPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGVFAEDEDTTG
KSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIVEFLQSMNEISAM
TGDGVNDAPALKKAEIGIAMGSGTAVAKSAAEMVLADDNFSSIVSAVEEG
RAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTD
GLPATALGFNPPDLDIMEKPPRKADEGLISGWLFFRYMAIGFYVGAATVG
AAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPHAMTMA
LSVLVTIEMLNAMNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYV
DVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFVARKIADGESPIYK
MHGIVLMWAVFFGLLYAMML*
BS26693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ca-P60A-PF | 1020 | CG3725-PF | 1..1020 | 1..1020 | 5190 | 100 | Plus |
| Ca-P60A-PH | 1020 | CG3725-PH | 1..1020 | 1..1020 | 5190 | 100 | Plus |
| Ca-P60A-PC | 1020 | CG3725-PC | 1..1020 | 1..1020 | 5190 | 100 | Plus |
| Ca-P60A-PD | 1020 | CG3725-PD | 1..1020 | 1..1020 | 5190 | 100 | Plus |
| Ca-P60A-PG | 1020 | CG3725-PG | 1..1020 | 1..1020 | 5190 | 100 | Plus |
