BS26702.complete Sequence
800 bp assembled on 2011-08-31
GenBank Submission: KX802796
> BS26702.complete
GAAGTTATCAGTCGACATGGGAACCATGACCAAGGACTACGACTATCTGC
TAAAGGTTCTACTGGTGGGCGACAGCGATGTGGGCAAGCACGAGATTCTC
TCAAACCTGGAGGATCCCTCCACGGAGAGTCCCTTCTGCAGTGGGAACGC
CTACAAGACGACCACCATCCTGCTGGAGGGCAAGCGGGTGAAGCTGCAGC
TGTGGGACACCTCCGGCCAGGGACGCTTCTGCACGATCATTCGCTCCTAT
TCGCGCGGCGCCCAGGGCATCATCCTCGTCTACGACATCACCAACAAGTG
GAGCTTCGACGGTATCGATCGGTGGCTCAAGGAGGTCGACGAGCACGCCC
CAGGAATTCCGAAGGTTCTTGTCGGGAATCGCCTGCACTTGGCCTTCAAG
CGACAGGTGGCGGCCAAACAGGCCGAGACCTACGCCAGCCGCAACAATAT
GTCCTGCTTCGAGATATCGCCTCTCTGCAACTTCAACATCCGCGAGTCCT
TTTGCGAACTGGCGCGGATGGCCCTGCATCGCAACGGCATGGAGCACATC
TGGCGCAGCAATAAGGTGCTGTCGCTTCAGGAATTGTGCTGCAGGACAAT
TGTGCGAAGGACGAGCGTGTATGCGATCGATTCGCTGCCGCTGCCGCCGT
CGGTGAAGTCGACGCTCAAGTCATACGCGCTGACCACGTCCCAGTGCTTC
AATTCACTGACCCAGAGCTCCAAGAGCAAGAACCGCTGCAAGACGCCGAC
GAGCAGCAGTCGGAATAGCTGTGCGATCGCGTGAAAGCTTTCTAGACCAT
BS26702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RC | 768 | CG1900-PC | 1..768 | 17..784 | 3840 | 100 | Plus |
| Rab40-RA | 768 | CG1900-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
| Rab40-RB | 798 | CG1900-PB | 163..798 | 149..784 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RC | 1449 | CG1900-RC | 110..879 | 15..784 | 3850 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 249..1018 | 15..784 | 3850 | 100 | Plus |
| Rab40-RB | 1618 | CG1900-RB | 413..1048 | 149..784 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 566..342 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460366..12460584 | 784..566 | 1095 | 100 | Minus |
| X | 23542271 | X | 12461456..12461650 | 343..149 | 975 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 149..15 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 295..176 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:33:26 has no hits.
BS26702.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 16:54:38 Download gff for
BS26702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 247..1013 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:49 Download gff for
BS26702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 251..1017 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:47 Download gff for
BS26702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 251..1017 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:47 Download gff for
BS26702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12460367..12460583 | 567..783 | 100 | <- | Minus |
| X | 12460989..12461211 | 344..566 | 100 | <- | Minus |
| X | 12461456..12461649 | 150..343 | 100 | <- | Minus |
| X | 12461736..12461868 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:49 Download gff for
BS26702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12354400..12354616 | 567..783 | 100 | <- | Minus |
| arm_X | 12355022..12355244 | 344..566 | 100 | <- | Minus |
| arm_X | 12355489..12355682 | 150..343 | 100 | <- | Minus |
| arm_X | 12355769..12355901 | 17..149 | 100 | | Minus |
BS26702.pep Sequence
Translation from 16 to 783
> BS26702.pep
MGTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNAYKTTT
ILLEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGI
DRWLKEVDEHAPGIPKVLVGNRLHLAFKRQVAAKQAETYASRNNMSCFEI
SPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQELCCRTIVRRTS
VYAIDSLPLPPSVKSTLKSYALTTSQCFNSLTQSSKSKNRCKTPTSSSRN
SCAIA*
BS26702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-PC | 255 | CG1900-PC | 1..255 | 1..255 | 1336 | 100 | Plus |
| Rab40-PA | 255 | CG1900-PA | 1..255 | 1..255 | 1336 | 100 | Plus |
| Rab40-PB | 265 | CG1900-PB | 1..265 | 1..255 | 1315 | 96.2 | Plus |
| Rab10-PA | 204 | CG17060-PA | 4..187 | 6..185 | 370 | 44.6 | Plus |
| Rab8-PC | 207 | CG8287-PC | 1..166 | 4..166 | 343 | 44 | Plus |
