BS26913.complete Sequence
2102 bp assembled on 2011-09-19
GenBank Submission: KX801767
> BS26913.complete
GAAGTTATCAGTCGACATGAGTGATACCGATACGGACGACACCGATCTGC
TGCTCCTGATACCACCGAACTTCTGCGCGGAGGACAAAATGAGCGCATGC
GCGGCGGCAGATGCGTTGGCCATGCCCCCGCCCCCTCCCCCGGCGACCAC
AAGTGCAGCGTACCAGTTCCTACATCCCAGCAAGAAATCGGAGCTGAATA
GCATCAATTCCCGGCTGCAGAACATCGCACTGGATGCGGAGGAGCCTCCC
TCGGACATTTCCACCATATCCACGAATACTGTAAGGAACGCTGGAAGGCC
AAGTAGGGAGCTCCACGGCATGGTGCACTCCACGCCGAAGAGTGGGTCCG
TTGAGCCCCTCCGCCATCGACCACTGGACGACAACATTCTGCTCGAAATC
GACCACTACCTAGACGACAATAATGCGCACCGTTGGCAGAGGCACGATCA
CCACCTGCATCACCGCAGCGACGATCATCTGAGGAACGAGCGGGCGGGGA
AAGAGGGTCATCCGGGAACCTCGTCTCTGCCCAGCATGAGGCTGGCCTCA
TCATCCTCCGGCGCCGTTTCTGTCGAAGCAGCCAGGGTCGATCGAAGCAG
CCTGAATGAGAACAAGATCATAAGTCTGAGCGAGCTCTGGGGCAAGAGCA
GCTTGACCAAAACTGTACTCGACAACAACTCGCCCAACCGACCACTGTGC
AGCTCTTCCCTAAAAGAGGAACAACTCAGAAGGCAGCATCTGGAGAAAAT
GGTGCACACACTGCAGTCGCATCTTTTGGAGTACCAGCAGCGAATCTCAG
TGGCCATCGAGGTGGATCGTTCGAAGGATGCTGCTCTCACCGAGGCAGAG
CAAACAGTTCAAAGTCTCAACTACGAGGTTCAGCACCTGCGGGACGCTGT
CCACCGGCTGGAAGCGGACAGGGGCGAATCCCAGAGCCGGTTTGATGCAC
TGCAGAACGAGTTGTCGCAGGCGGTCAACTTGGCCACCAGGTTTCAGGAA
AAGAATGATAAACTCGAAAGGGAGTTGGACCATTGCAGGCAAGACGCCAA
GCAATGGGAAGAAAGACTGGAGCAACTGGAAATGCAACTCAACAGCAGCA
AAAGAGCGGAGGAGCTGTCACATGCCGAGCTGAATAAGCTAAGGGATAAG
TTTGCCAAGGTAGACTACCAACAAGAAAAGCTAAAAGCGCGGATAGAGGA
ACTGGAGAAGGAAAATAACACGCTGACCAATCAAAAGGAAATGCTGCAAG
AATATCATCAGAAGCAGAAAGCAAGAGCGGATTCCTTGGAGAGCCATCGT
AAATCCCTACAAGAAACTCTGGCGAACCTAACTGAAACTGAGACCAATCT
CAAGAAGAAGCTAGATATACAGCAGAAATCCCTAAAGCAATACTACCAAC
AGCAAATGGAAAATGTTGTGGCCAAGAAGATGCAGGAGTTCCAGGACCAA
CTGGACAAGAATGAGGAGCATTTAAAGAACGAAGCTCGGGAGCGTGAACG
ACTCATAGCCGAGCGGGCAGTAAAGCAGCTTGAAATGATCAATGAGAAAA
ACAACCAGGAATTGAATCTCATCCAGGAAAAGCACAACGAGGAGGTGGAG
CTGTACCGCCTTCAACTAGCGAATGCCTCGAAGAAGATCGATGAAATGGA
TCTCAAGCTCAGCTGTTACAAAACAAAGCGTGCTGATATTGCGGAGAAAC
TGCATGGGGTAATGGAGGCCCAGTGGCAGCAGGCCCTTGCTATCCTCACC
ACTCCTAGTCAAAACTCCATTATCCAATCCAGTGACACTGAAGCCAGTGA
ATCTCCGGAGCTAAATAATGCACGCATGTATCCAGAAACGCCCAAATCGA
GCAAATCGCAGCGCAGCAACAACACTGAGAAGAATAACCTGGATGTGGTG
GGCAAACGGGATCCCCCCTCGCCGATGGACAAGCTGCAGGCCTACATTGA
ACTGCTGCTCAGCAAGTCGCCCAGTGATTTCGACAGGCTCGACGAGATCT
TGGCCATGACATCCAAACAGGGTAGCAAACAAAGCAAACCAAAGAGCGGA
AGTGGCAACAGTAAGCCTCCACCTTGGAAGTGCTGAAAGCTTTCTAGACC
AT
BS26913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnb-RB | 2070 | CG5690-PB | 1..2070 | 17..2086 | 10350 | 100 | Plus |
| Cnb-RA | 2070 | CG5690-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnb-RB | 2263 | CG5690-RB | 44..2114 | 16..2086 | 10355 | 100 | Plus |
| Cnb-RA | 2453 | CG5690-RA | 234..2304 | 16..2086 | 10355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1947859..1949027 | 16..1184 | 5830 | 99.9 | Plus |
| 3L | 28110227 | 3L | 1949707..1950113 | 1680..2086 | 2035 | 100 | Plus |
| 3L | 28110227 | 3L | 1949304..1949643 | 1341..1680 | 1700 | 100 | Plus |
| 3L | 28110227 | 3L | 1949079..1949243 | 1178..1342 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:05 has no hits.
BS26913.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:15 Download gff for
BS26913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5690-RA | 236..2304 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:21 Download gff for
BS26913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnb-RA | 235..2303 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:36 Download gff for
BS26913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnb-RA | 235..2303 | 17..2085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:36 Download gff for
BS26913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1947860..1949023 | 17..1180 | 100 | -> | Plus |
| 3L | 1949082..1949243 | 1181..1342 | 100 | -> | Plus |
| 3L | 1949306..1949643 | 1343..1680 | 100 | -> | Plus |
| 3L | 1949708..1950112 | 1681..2085 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:21 Download gff for
BS26913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1947860..1949023 | 17..1180 | 100 | -> | Plus |
| arm_3L | 1949082..1949243 | 1181..1342 | 100 | -> | Plus |
| arm_3L | 1949306..1949643 | 1343..1680 | 100 | -> | Plus |
| arm_3L | 1949708..1950112 | 1681..2085 | 100 | | Plus |
BS26913.pep Sequence
Translation from 16 to 2085
> BS26913.pep
MSDTDTDDTDLLLLIPPNFCAEDKMSACAAADALAMPPPPPPATTSAAYQ
FLHPSKKSELNSINSRLQNIALDAEEPPSDISTISTNTVRNAGRPSRELH
GMVHSTPKSGSVEPLRHRPLDDNILLEIDHYLDDNNAHRWQRHDHHLHHR
SDDHLRNERAGKEGHPGTSSLPSMRLASSSSGAVSVEAARVDRSSLNENK
IISLSELWGKSSLTKTVLDNNSPNRPLCSSSLKEEQLRRQHLEKMVHTLQ
SHLLEYQQRISVAIEVDRSKDAALTEAEQTVQSLNYEVQHLRDAVHRLEA
DRGESQSRFDALQNELSQAVNLATRFQEKNDKLERELDHCRQDAKQWEER
LEQLEMQLNSSKRAEELSHAELNKLRDKFAKVDYQQEKLKARIEELEKEN
NTLTNQKEMLQEYHQKQKARADSLESHRKSLQETLANLTETETNLKKKLD
IQQKSLKQYYQQQMENVVAKKMQEFQDQLDKNEEHLKNEARERERLIAER
AVKQLEMINEKNNQELNLIQEKHNEEVELYRLQLANASKKIDEMDLKLSC
YKTKRADIAEKLHGVMEAQWQQALAILTTPSQNSIIQSSDTEASESPELN
NARMYPETPKSSKSQRSNNTEKNNLDVVGKRDPPSPMDKLQAYIELLLSK
SPSDFDRLDEILAMTSKQGSKQSKPKSGSGNSKPPPWKC*
BS26913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnb-PB | 689 | CG5690-PB | 1..689 | 1..689 | 3523 | 100 | Plus |
| Cnb-PA | 689 | CG5690-PA | 1..689 | 1..689 | 3523 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 1011..1525 | 169..668 | 216 | 23.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 1014..1528 | 169..668 | 216 | 23.3 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 1036..1550 | 169..668 | 216 | 23.3 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 722..1253 | 144..618 | 174 | 20.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 725..1256 | 144..618 | 174 | 20.6 | Plus |
