BS27003.complete Sequence
1325 bp assembled on 2011-09-16
GenBank Submission: KX800915
> BS27003.complete
GAAGTTATCAGTCGACATGCAGTCATTTCTCATCCAAATGCTGCCGATAT
TGCTTGGAATTTTTTTTGTGTGGCTATCGAACAGCACAGCCTTATCTGAG
GTGAACTGGAAGAATCACTCGCTTCACCGCATTCATCATCGCACAAAAGT
AATAACTGCGGTGGACATCATAAGCAGTCACAACTATCCGGTGCAAACAC
ACACTGTGGTCACCAGGGATGGCTACATACTGTCGGTCTTCCGAATCCCA
TCATCACAGCTATGTGCAAGTAGCGAACCAAAGCCAGTTGTTTTGATTAA
CCATGGCATGACTGGCTCCGCGGACTCATGGCTTCTAACTGGACCGCGGA
ATGGACTGCCCTTTTTGTTGGCCGATGCTTGTTACGATGTGTGGCTGATA
AACTGTCGCGGGACCCGGTACTCCAGGAAGCATCTCAAACTCAAGGCCTG
GCTCTTGCAGTTTTGGCGTTTTAGCTGGCATGAAATCGGAATGGAGGACT
TGCCCGCCACTGTTGACCATATCCTGGCCTCCACGAAACGGAACTCTTTG
CACTATGTGGGTCACTCGCAGGGATGCACATCCATGCTGGTGATGCTCAG
CATGAGACCGGAGTACAATAAACGGATCAGGACCACCATCCTACTGGCCC
CGCCCGTCTTCTTGAAACATTCTCTTTCGATGGGTCATAAGATAATGAAG
CCTCTGTTCAACCTCCTGCCGGACATTGAGTTGTTGCCCCATCACAAGAT
GCTGAATTCCGCGGTATCAGCCATATGCAAAATTCTTGGCGTGAAGGACG
TTTGCACTGCACTGTATCTCCTAACCAATGGACGAGTATCCCAGCACATG
AACAGGACCCTCATTCCGATGTTGATTGCCACTCATCCGGCTGGGATTTC
TAGCAGGCAGCCGAGACACTTCTTCCAGCTCAAGGACTCCGGGAGATTCC
GACAATACGACTTTGGATTTGGAATGAACTATCTTATTTACAGACAAAAC
ACTCCACCGGAATATCCCCTGGAAATGGTGCGTCCGCACTCCGCCATCCA
CATCTTCTACAGCGATGACGATGGAACCATCTCTCCGAGAGACGTCCTAA
CCCTTGCCAGCAAGTTGCCTTACGCAGTCCCCCATCATATCACGGATGAA
ACCTGGAACCATATGGACTTTCTTCTAGCTAACAACATAAATGAATTGAT
TAATAATCCAGTAATCAAGATTATCAAGACCTTCGAAGAAAATATTAAGC
ACAAAATTGGGAATATAAAGGGGGAAATAAGTATTGATGCACTTTTAAAT
GAATTTTAAAAGCTTTCTAGACCAT
BS27003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11608-RB | 1293 | CG11608-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| CG11598-RB | 1167 | CG11598-PB | 367..521 | 464..618 | 235 | 76.8 | Plus |
| CG11600-RB | 1221 | CG11600-PB | 433..584 | 464..615 | 220 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11608-RB | 1379 | CG11608-RB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| CG11598-RB | 1248 | CG11598-RB | 367..521 | 464..618 | 235 | 76.8 | Plus |
| CG11600-RB | 1330 | CG11600-RB | 446..597 | 464..615 | 220 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12638735..12639431 | 160..856 | 3485 | 100 | Plus |
| 3R | 32079331 | 3R | 12639494..12639947 | 856..1309 | 2270 | 100 | Plus |
| 3R | 32079331 | 3R | 12638481..12638566 | 17..102 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 12638618..12638681 | 99..162 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 12635338..12635492 | 464..618 | 235 | 76.8 | Plus |
| 3R | 32079331 | 3R | 12637039..12637190 | 464..615 | 220 | 76.3 | Plus |
| 3R | 32079331 | 3R | 12633785..12633936 | 464..615 | 190 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:37:45 has no hits.
BS27003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:21:30 Download gff for
BS27003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11608-RB | 1..1291 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:36 Download gff for
BS27003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11608-RB | 1..1291 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:55 Download gff for
BS27003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11608-RB | 1..1291 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:55 Download gff for
BS27003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12638481..12638564 | 17..100 | 100 | -> | Plus |
| 3R | 12638620..12638679 | 101..160 | 100 | -> | Plus |
| 3R | 12638736..12639431 | 161..856 | 100 | -> | Plus |
| 3R | 12639495..12639945 | 857..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:36 Download gff for
BS27003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8464203..8464286 | 17..100 | 100 | -> | Plus |
| arm_3R | 8464342..8464401 | 101..160 | 100 | -> | Plus |
| arm_3R | 8464458..8465153 | 161..856 | 100 | -> | Plus |
| arm_3R | 8465217..8465667 | 857..1307 | 100 | | Plus |
BS27003.pep Sequence
Translation from 16 to 1308
> BS27003.pep
MQSFLIQMLPILLGIFFVWLSNSTALSEVNWKNHSLHRIHHRTKVITAVD
IISSHNYPVQTHTVVTRDGYILSVFRIPSSQLCASSEPKPVVLINHGMTG
SADSWLLTGPRNGLPFLLADACYDVWLINCRGTRYSRKHLKLKAWLLQFW
RFSWHEIGMEDLPATVDHILASTKRNSLHYVGHSQGCTSMLVMLSMRPEY
NKRIRTTILLAPPVFLKHSLSMGHKIMKPLFNLLPDIELLPHHKMLNSAV
SAICKILGVKDVCTALYLLTNGRVSQHMNRTLIPMLIATHPAGISSRQPR
HFFQLKDSGRFRQYDFGFGMNYLIYRQNTPPEYPLEMVRPHSAIHIFYSD
DDGTISPRDVLTLASKLPYAVPHHITDETWNHMDFLLANNINELINNPVI
KIIKTFEENIKHKIGNIKGEISIDALLNEF*
BS27003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11608-PB | 430 | CG11608-PB | 1..430 | 1..430 | 2287 | 100 | Plus |
| CG18530-PA | 389 | CG18530-PA | 19..386 | 46..413 | 1091 | 53 | Plus |
| CG11598-PB | 388 | CG11598-PB | 17..380 | 44..407 | 1048 | 49.5 | Plus |
| CG11600-PB | 406 | CG11600-PB | 1..402 | 8..407 | 1023 | 48.5 | Plus |
| mag-PA | 399 | CG5932-PA | 27..397 | 43..407 | 742 | 40.3 | Plus |
