Clone BS27004 Report

Search the DGRC for BS27004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:270
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG8299-RA
Protein status:BS27004.pep: gold
Sequenced Size:815

Clone Sequence Records

BS27004.complete Sequence

815 bp assembled on 2011-09-16

GenBank Submission: KX804805

> BS27004.complete
GAAGTTATCAGTCGACATGTCGCTACGTTTGGGTTTGTTTCTTTTGGCTG
CACTTGGTGTGGTAATTCTCACGGATTCCGCCTCCATAAGCACCCACATT
GTTGGTGGCGATCAGGCGGACATCGCTGACTTTCCGTACCAGGTGTCCGT
TCGCCTGGAGACCTACATGCTGCTCCACATCTGCGGTGGTAGCATCTATG
CACCACGGGTCGTCATCACCGCCGCCCACTGCATCAAGGGACGCTATGCC
TCGTACATCCGGATCGTGGCTGGTCAGAACTCGATTGCCGATCTGGAGGA
GCAGGGTGTTAAGGTCAGCAAACTGATCCCCCATGCCGGCTACAATAAGA
AAACGTATGTGAATGATATCGGTTTGATCATCACTCGCGAGCCATTGGAG
TACTCAGCCCTGGTGCAACCCATTGCTGTGGCCCTGGAGGCACCGCCGTC
GGGTGCCCAGGCCGTTGTAAGTGGTTGGGGCAAGCGGGCTGAAGATGATG
AAGCTCTGCCCGCCATGCTGCGCGCCGTTGAGCTGCAGATCATCGAGAAG
AGCACCTGCGGTGCCCAGTATCTGACCAAGGACTACACGGTGACCGATGA
GATGCTCTGCGCCGGCTATCTGGAGGGCGGCAAGGACACCTGCAACGGCG
ATTCCGGTGGACCCTTGGCCGTGGACGGAGTCCTGGTGGGTGTGGTGTCC
TGGGGCGTGGGTTGCGGCAGGGAAGGATTCCCGGGTGTCTACACCAGCGT
CAATTCCCATATCGATTGGATCGAAGAGCAGGCGGAGGCGTATCTCTAAA
AGCTTTCTAGACCAT

BS27004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8299-RA 783 CG8299-PA 1..783 17..799 3915 100 Plus
Try29F-RD 804 CG9564-PD 613..717 602..706 180 78.1 Plus
Try29F-RC 804 CG9564-PC 613..717 602..706 180 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8299-RA 874 CG8299-RA 1..785 17..801 3925 100 Plus
Try29F-RD 1280 CG9564-RD 687..791 602..706 180 78.1 Plus
Try29F-RC 932 CG9564-RC 687..791 602..706 180 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15940699..15941484 801..16 3930 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:37:51 has no hits.

BS27004.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:21:30 Download gff for BS27004.complete
Subject Subject Range Query Range Percent Splice Strand
CG8299-RA 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:37 Download gff for BS27004.complete
Subject Subject Range Query Range Percent Splice Strand
CG8299-RA 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:57 Download gff for BS27004.complete
Subject Subject Range Query Range Percent Splice Strand
CG8299-RA 1..781 17..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:57 Download gff for BS27004.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15940703..15941483 17..797 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:37 Download gff for BS27004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11828208..11828988 17..797 100   Minus

BS27004.pep Sequence

Translation from 16 to 798

> BS27004.pep
MSLRLGLFLLAALGVVILTDSASISTHIVGGDQADIADFPYQVSVRLETY
MLLHICGGSIYAPRVVITAAHCIKGRYASYIRIVAGQNSIADLEEQGVKV
SKLIPHAGYNKKTYVNDIGLIITREPLEYSALVQPIAVALEAPPSGAQAV
VSGWGKRAEDDEALPAMLRAVELQIIEKSTCGAQYLTKDYTVTDEMLCAG
YLEGGKDTCNGDSGGPLAVDGVLVGVVSWGVGCGREGFPGVYTSVNSHID
WIEEQAEAYL*

BS27004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8299-PA 260 CG8299-PA 1..260 1..260 1339 100 Plus
betaTry-PB 253 CG18211-PB 31..253 28..256 443 41.1 Plus
betaTry-PA 253 CG18211-PA 31..253 28..256 443 41.1 Plus
alphaTry-PA 256 CG18444-PA 31..255 28..258 435 39.5 Plus
etaTry-PA 262 CG12386-PA 12..262 7..260 428 39 Plus