BS27004.complete Sequence
815 bp assembled on 2011-09-16
GenBank Submission: KX804805
> BS27004.complete
GAAGTTATCAGTCGACATGTCGCTACGTTTGGGTTTGTTTCTTTTGGCTG
CACTTGGTGTGGTAATTCTCACGGATTCCGCCTCCATAAGCACCCACATT
GTTGGTGGCGATCAGGCGGACATCGCTGACTTTCCGTACCAGGTGTCCGT
TCGCCTGGAGACCTACATGCTGCTCCACATCTGCGGTGGTAGCATCTATG
CACCACGGGTCGTCATCACCGCCGCCCACTGCATCAAGGGACGCTATGCC
TCGTACATCCGGATCGTGGCTGGTCAGAACTCGATTGCCGATCTGGAGGA
GCAGGGTGTTAAGGTCAGCAAACTGATCCCCCATGCCGGCTACAATAAGA
AAACGTATGTGAATGATATCGGTTTGATCATCACTCGCGAGCCATTGGAG
TACTCAGCCCTGGTGCAACCCATTGCTGTGGCCCTGGAGGCACCGCCGTC
GGGTGCCCAGGCCGTTGTAAGTGGTTGGGGCAAGCGGGCTGAAGATGATG
AAGCTCTGCCCGCCATGCTGCGCGCCGTTGAGCTGCAGATCATCGAGAAG
AGCACCTGCGGTGCCCAGTATCTGACCAAGGACTACACGGTGACCGATGA
GATGCTCTGCGCCGGCTATCTGGAGGGCGGCAAGGACACCTGCAACGGCG
ATTCCGGTGGACCCTTGGCCGTGGACGGAGTCCTGGTGGGTGTGGTGTCC
TGGGGCGTGGGTTGCGGCAGGGAAGGATTCCCGGGTGTCTACACCAGCGT
CAATTCCCATATCGATTGGATCGAAGAGCAGGCGGAGGCGTATCTCTAAA
AGCTTTCTAGACCAT
BS27004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8299-RA | 783 | CG8299-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Try29F-RD | 804 | CG9564-PD | 613..717 | 602..706 | 180 | 78.1 | Plus |
Try29F-RC | 804 | CG9564-PC | 613..717 | 602..706 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8299-RA | 874 | CG8299-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Try29F-RD | 1280 | CG9564-RD | 687..791 | 602..706 | 180 | 78.1 | Plus |
Try29F-RC | 932 | CG9564-RC | 687..791 | 602..706 | 180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15940699..15941484 | 801..16 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:51 has no hits.
BS27004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:21:30 Download gff for
BS27004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8299-RA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:37 Download gff for
BS27004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8299-RA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:57 Download gff for
BS27004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8299-RA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:57 Download gff for
BS27004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15940703..15941483 | 17..797 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:37 Download gff for
BS27004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11828208..11828988 | 17..797 | 100 | | Minus |
BS27004.pep Sequence
Translation from 16 to 798
> BS27004.pep
MSLRLGLFLLAALGVVILTDSASISTHIVGGDQADIADFPYQVSVRLETY
MLLHICGGSIYAPRVVITAAHCIKGRYASYIRIVAGQNSIADLEEQGVKV
SKLIPHAGYNKKTYVNDIGLIITREPLEYSALVQPIAVALEAPPSGAQAV
VSGWGKRAEDDEALPAMLRAVELQIIEKSTCGAQYLTKDYTVTDEMLCAG
YLEGGKDTCNGDSGGPLAVDGVLVGVVSWGVGCGREGFPGVYTSVNSHID
WIEEQAEAYL*
BS27004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8299-PA | 260 | CG8299-PA | 1..260 | 1..260 | 1339 | 100 | Plus |
betaTry-PB | 253 | CG18211-PB | 31..253 | 28..256 | 443 | 41.1 | Plus |
betaTry-PA | 253 | CG18211-PA | 31..253 | 28..256 | 443 | 41.1 | Plus |
alphaTry-PA | 256 | CG18444-PA | 31..255 | 28..258 | 435 | 39.5 | Plus |
etaTry-PA | 262 | CG12386-PA | 12..262 | 7..260 | 428 | 39 | Plus |