BS27106.complete Sequence
1364 bp assembled on 2011-09-19
GenBank Submission: KX804098
> BS27106.complete
GAAGTTATCAGTCGACATGTCATACCACTTTACTTCTTCGGCAAAACAGA
ATGTTACATTACAATCATGTAAGGAAGAGAATTTATTATCACTAGAAGAG
GAGGACTCCGACGAGGAACGCGAGCTAACCAACCTTAATTGGCTTTTGAG
AAATCAAAATTTAACTTGGCCGAAAACCATTGATTACAACCCAACCGAAA
TTTTAAATTCGAAAAGGAACACAGAACCAACTCACAAGTCAAGAGTCCAT
GATAAACAAATCAAAATGTTTTATTCTACTCGTGAAAACACAGATAAAAT
ATCACATATAATTTTAGAGGCTAATGCGCAAAAATCTATAACAAAGAGAC
CAACTGCATCAGAACGCTTTGAAATTTTCGTCAATAAAATCAAAAGAGAC
TTAACAGAATATGAAAAGTTGGCTAGCAAGTATGAAACCGACGTGACCGA
GAAACCGCCTTTTAATTATTCACATATAATAGGAATGGCTATGTTACAAA
ATGGGCGAATAACTTTACAACAATTATGTTCTTGGATAGAGGCCAAGTTT
GCATTTTTTAGAGTTCGAAAGAAATGGAATAATTCCATTAGGCATAACTT
ATCATTACACCATTGCTTTCGTAACCGAAAAAGAGAAGAAAGGGGAAAAG
GTGGTTACTGGGAGCTGGGGGTCGACCCAAAAAAGTGTGACCGGAAACGA
ATTCGAAATAGGAAAATTTTTCATCCAACGCAAAATCAAACTGCTAAGTT
ACAGTATGAACACTTAACAGAAATACAACAAGCAAAATCTGCTCGAAAAA
ATCATTCAAGACACATTAAAAAATCGAAGACAAGTAGTCTTCCAGAAACA
TCTGAAGCAAATATATTTAATGTCGTGCCCCATAAAAAACACAATATAGC
TGATGAAAATGATGGGCAACGTCAGTTACAAACAATAAATAAAGATGACA
TTTTAAAAAAGAAGTCTGAGCTTGACACTATTGTATCAAGTACTGAATCA
TTTTTAACAGAATCTCAAAACTTAAACTGTTTTAATTCGCACAAGACGGA
TACTACCAACACCCCCATTTCTGCAGAAAAGAATTTCTGCACATTCAATA
ATTTCTATTCCGAAATGACACCCGTGCTGGCTTCAAATTCAAATATCGTG
GAAGACCAAAATGTATCAACTGATGTATCCTGGCCTAGCCATCCATGCAA
CATAACAATTAATTATGATTACACTAACTTTCAACCAATAGTAGATAGCA
TTGCTGAGCAGTTCCAATGCCTGCATGATAGCGCTGGGTATGATCGAAAC
GACGATATCTTAGAAAACCTTCTTGATGTTTGTGTTACGCCTTATTGAAA
GCTTTCTAGACCAT
BS27106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32006-RA | 1332 | CG32006-PA | 1..1332 | 17..1348 | 6645 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32006-RA | 1684 | CG32006-RA | 83..1416 | 17..1350 | 6655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 152439..152920 | 581..1062 | 2410 | 100 | Plus |
| 4 | 1348131 | 4 | 151751..152130 | 17..396 | 1900 | 100 | Plus |
| 4 | 1348131 | 4 | 152984..153270 | 1064..1350 | 1435 | 100 | Plus |
| 4 | 1348131 | 4 | 152193..152378 | 395..580 | 930 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1093..1318 | 913..679 | 133 | 56.7 | Minus |
BS27106.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:16 Download gff for
BS27106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 80..1410 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:24 Download gff for
BS27106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 83..1413 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:45 Download gff for
BS27106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 83..1413 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:45 Download gff for
BS27106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 151751..152130 | 17..396 | 100 | -> | Plus |
| 4 | 152195..152378 | 397..580 | 100 | -> | Plus |
| 4 | 152439..152921 | 581..1063 | 99 | -> | Plus |
| 4 | 152984..153267 | 1064..1347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:24 Download gff for
BS27106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 172821..173004 | 397..580 | 100 | -> | Plus |
| arm_4 | 173610..173893 | 1064..1347 | 100 | | Plus |
| arm_4 | 172377..172756 | 17..396 | 100 | -> | Plus |
| arm_4 | 173065..173547 | 581..1063 | 99 | -> | Plus |
BS27106.pep Sequence
Translation from 16 to 1347
> BS27106.pep
MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT
WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL
EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN
YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC
FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL
TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG
QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP
ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY
DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY*
BS27106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32006-PA | 443 | CG32006-PA | 1..443 | 1..443 | 2354 | 100 | Plus |
| fd64A-PB | 365 | CG1132-PB | 90..173 | 145..217 | 157 | 44 | Plus |
| fd64A-PA | 365 | CG1132-PA | 90..173 | 145..217 | 157 | 44 | Plus |
| fd19B-PA | 260 | CG9571-PA | 58..134 | 146..217 | 156 | 45.5 | Plus |
