BS27304.complete Sequence
902 bp assembled on 2011-09-20
GenBank Submission: KX803093
> BS27304.complete
GAAGTTATCAGTCGACATGAGTTACCGAATCGGCGAGGAAAAACTTGAAG
TATATTACCAGGTATCCCTGGAACTGGTCAGGAAGTGCGGTCCGCTCTTT
TTGGAGGGTTTCCAGAAACCGAAAACCGATTACGAAGTCAAGTCAGCGTT
CTATGACTTGGTCACCGTGTACGACAAGCAAATAGAAGCCACTCTAACAG
ATGGTTTGCTAAAGACCTTTCCGGAATCCAAAATAATAGGCGAAGAAGCT
ATGGCCAACGCCAAAACGCCGCCTGAGTTGACGGATGCCCCCACTTGGAT
CATAGATCCCATTGATGGCACCAACAACTACGTTCGAAAGATCCCCCATT
GCTGTATTTCCGTGGGCTTGGCCATAAACAAAGAGCTGGTGCTGGGGATT
GTGTACAATCCATCTGCAAATGAGTTGTATTCAGCTTGGCAAGGCCACGG
AGCTTATTTAAATGGACAACCCATTGAGGTTTCCAACGCTAAGAAGATAA
ACCAAGCATTGGTGTGCTATGAGATCTCCCTAATCGTGGTGTCTAAGGGG
CGGGACAAGAACGTGAAGCGTCTCTACAAGCTGGCCTCGAGTGCCACTGG
CACCCGCAGCTTTGGATGCGCAGCTCTCACGCTCTGCTATATAGCCGCCG
GCAGATGTGACGCCTATCATGTGGAGAATCTAAAGCCCTGGGATCTGGCT
GGCGGTGCGGTAATCCTCAGGGAAGCCGGTGGCAGGGTATATCACACAAG
CGGTGCAAGATTCGATGTGATGAAACCCGACTGTGTGTGCACCAGCTCTG
AAGAATTGGCCAAAAGTGTAATCCAATTGATAGAAGGAGCCGACCAAATT
AGCGGCTATACTTTTAAATAAAAGCTCGTCGCGCGCGACGCAGTAGTGTC
AT
BS27304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17028-RB | 855 | CG17028-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG17028-RA | 855 | CG17028-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG17029-RB | 855 | CG17029-PB | 259..774 | 275..790 | 480 | 72.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17028-RB | 893 | CG17028-RB | 19..875 | 16..872 | 4285 | 100 | Plus |
| CG17028-RA | 1140 | CG17028-RA | 19..875 | 16..872 | 4285 | 100 | Plus |
| CG17029-RB | 1167 | CG17029-RB | 465..980 | 275..790 | 480 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15978542..15979022 | 16..496 | 2405 | 100 | Plus |
| 3L | 28110227 | 3L | 15979467..15979739 | 600..872 | 1365 | 100 | Plus |
| 3L | 28110227 | 3L | 15979302..15979407 | 495..600 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 15977334..15977482 | 275..423 | 295 | 79.9 | Plus |
| 3L | 28110227 | 3L | 15978010..15978248 | 552..790 | 280 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:34 has no hits.
BS27304.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:36 Download gff for
BS27304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RB | 20..875 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:02 Download gff for
BS27304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RA | 20..875 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:12 Download gff for
BS27304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RA | 20..875 | 17..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:12 Download gff for
BS27304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15978543..15979022 | 17..496 | 100 | -> | Plus |
| 3L | 15979304..15979407 | 497..600 | 100 | -> | Plus |
| 3L | 15979468..15979739 | 601..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:02 Download gff for
BS27304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15972404..15972507 | 497..600 | 100 | -> | Plus |
| arm_3L | 15971643..15972122 | 17..496 | 100 | -> | Plus |
| arm_3L | 15972568..15972839 | 601..872 | 100 | | Plus |
BS27304.pep Sequence
Translation from 16 to 870
> BS27304.pep
MSYRIGEEKLEVYYQVSLELVRKCGPLFLEGFQKPKTDYEVKSAFYDLVT
VYDKQIEATLTDGLLKTFPESKIIGEEAMANAKTPPELTDAPTWIIDPID
GTNNYVRKIPHCCISVGLAINKELVLGIVYNPSANELYSAWQGHGAYLNG
QPIEVSNAKKINQALVCYEISLIVVSKGRDKNVKRLYKLASSATGTRSFG
CAALTLCYIAAGRCDAYHVENLKPWDLAGGAVILREAGGRVYHTSGARFD
VMKPDCVCTSSEELAKSVIQLIEGADQISGYTFK*
BS27304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17028-PB | 284 | CG17028-PB | 1..284 | 1..284 | 1485 | 100 | Plus |
| CG17028-PA | 284 | CG17028-PA | 1..284 | 1..284 | 1485 | 100 | Plus |
| CG17029-PB | 284 | CG17029-PB | 1..284 | 1..284 | 1054 | 69.4 | Plus |
| CG17029-PA | 284 | CG17029-PA | 1..284 | 1..284 | 1054 | 69.4 | Plus |
| CG17026-PA | 284 | CG17026-PA | 5..277 | 7..277 | 638 | 44.3 | Plus |
