BS27309.complete Sequence
1286 bp assembled on 2011-09-09
GenBank Submission: KX805248
> BS27309.complete
GAAGTTATCAGTCGACATGTCGGACGCACTGGAGGAGCCACCATTGTACC
TTACGCCGCAGTTCTTCAGGCGCACCCTGGAGCACGGATTGCAGCAGCTG
GACCTGCAGGTCATCGGTGTCCAGCTGACCAATCTGACGCGTGGCGGGGA
AAACTACTGCAGCAACATTTACCGAGCTCAGATTAAGTATCGCAATGCCG
AGAGCTGCGCAATGGAGACATCCCTGATCGTCAAGTCCATGCCGGACGAG
AAGCAGGCCATTCTGGCCCGCCTGCACATTTATAACAAGGAGACGCTTTT
CTACATGCACATCAAGCCCAAGCTGGAGGCACTCATGTGGAGGGCGGTGG
ATAGTTTCAGCGCTTGGACTTTGGCTCCCAAGCACTACTATTCCACGACC
CAGCCGGAGCAGACGATCATCCTGGAGGACCTTTGCGCCGCAGGCTATCA
GTTGAAGTGCCGCCAGCTGGGTCTGGACTTTGACCACGCCGCTCTGGTGA
TGGCCAAACTGGCCGAATACCATGCCCTCACCATGGTCATGGCCGAACGG
GAGCCAGAAACCATTGTGGACCGCTATCCCTTCGGTCTGCTCCACATGGA
TGCCATCAATTCGGAGCCCTTCAAGCTGCTCTTCGGCACTCAGCTCCTAA
AGCTGGCCGCTCTGGTCGGTGACTGTGAGGGATTCGGTGGGATCACCACA
AAGCTCTACCGCTACCACGAGCACTTCACCGAACGAGTCCTGAAGGCGGT
GTACCCACTGCGCGGCAACCATAACGTGCTCAATCACGGCGATCTTTGGG
TGAACAACATATTCTTCAAGTACGATGCGGAGTACACGGTGCAGCAGGTG
AAGATTATTGACTTCCAGCTGTGCTTCTACGGCAGCCTGGGCTTCGACAT
CAACTACTTCCTGAACACCAGCTTGGAACTGGAGGTGCTACGTGACCGGC
GGCAGGAGCTTGTCGACATCTACTACAGGTCCCTGGTGGACTGCCTGAAG
CATCTGCCCTGGTCCAAGGAGCTGCCCAGCTATGAGGATATCATGGATGA
AATCAGAAAGCGCGAAGCCTACGGTTTCTTTGTGGCTTTCGGATTCTTCC
CGCTGATGAGCATGATCGGTGTGGACTCCGAGGACAACTCACTGAAGAAC
TTTCACGACGAGACATTCGCCAGGCAGAAGGTGCAGCTCATGTTCGAAGG
AAACACTCGCACGCTGGAGAGCCTCAAGTGCACCTTGAAACGTCTGGACG
AGTTGAAACTGTTCGACTAGAAGCTTTCTAGACCAT
BS27309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7135-RA | 1254 | CG7135-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7135-RA | 1518 | CG7135-RA | 29..1282 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18104110..18104584 | 382..856 | 2375 | 100 | Plus |
| X | 23542271 | X | 18104744..18105157 | 857..1270 | 2070 | 100 | Plus |
| X | 23542271 | X | 18103681..18104046 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:00:05 has no hits.
BS27309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 15:28:17 Download gff for
BS27309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7135-RA | 1..1254 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:55 Download gff for
BS27309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7135-RA | 29..1282 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:25 Download gff for
BS27309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7135-RA | 29..1282 | 17..1270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:25 Download gff for
BS27309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18103681..18104045 | 17..381 | 100 | -> | Plus |
| X | 18104110..18104584 | 382..856 | 100 | -> | Plus |
| X | 18104744..18105157 | 857..1270 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:55 Download gff for
BS27309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17997714..17998078 | 17..381 | 100 | -> | Plus |
| arm_X | 17998143..17998617 | 382..856 | 100 | -> | Plus |
| arm_X | 17998777..17999190 | 857..1270 | 100 | | Plus |
BS27309.pep Sequence
Translation from 16 to 1269
> BS27309.pep
MSDALEEPPLYLTPQFFRRTLEHGLQQLDLQVIGVQLTNLTRGGENYCSN
IYRAQIKYRNAESCAMETSLIVKSMPDEKQAILARLHIYNKETLFYMHIK
PKLEALMWRAVDSFSAWTLAPKHYYSTTQPEQTIILEDLCAAGYQLKCRQ
LGLDFDHAALVMAKLAEYHALTMVMAEREPETIVDRYPFGLLHMDAINSE
PFKLLFGTQLLKLAALVGDCEGFGGITTKLYRYHEHFTERVLKAVYPLRG
NHNVLNHGDLWVNNIFFKYDAEYTVQQVKIIDFQLCFYGSLGFDINYFLN
TSLELEVLRDRRQELVDIYYRSLVDCLKHLPWSKELPSYEDIMDEIRKRE
AYGFFVAFGFFPLMSMIGVDSEDNSLKNFHDETFARQKVQLMFEGNTRTL
ESLKCTLKRLDELKLFD*
BS27309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7135-PA | 417 | CG7135-PA | 1..417 | 1..417 | 2196 | 100 | Plus |
| CG13360-PA | 421 | CG13360-PA | 13..421 | 7..417 | 731 | 40.5 | Plus |
| CG9497-PB | 417 | CG9497-PB | 13..417 | 8..417 | 679 | 36.8 | Plus |
| CG9497-PA | 417 | CG9497-PA | 13..417 | 8..417 | 679 | 36.8 | Plus |
| CG9498-PA | 424 | CG9498-PA | 13..421 | 9..416 | 635 | 36.3 | Plus |
