BS27310.complete Sequence
2027 bp assembled on 2011-10-21
GenBank Submission: KX800699
> BS27310.complete
GAAGTTATCAGTCGACATGGCGGAATATTTGCAGCCTGGAGTCATCCGGA
AGCTGGACGAGGTGGTGGTGAACCGCATAGCCGCCGGCGAGATTATTCAG
CGACCCGCCAACGCCCTAAAAGAGCTGCTCGAGAACAGTTTGGACGCCCA
ATCGACCCACATCCAGGTGCAGGTGAAGGCCGGTGGGCTGAAGCTGCTTC
AAATCCAGGACAATGGCACGGGGATACGACGCGAGGATCTGGCCATCGTC
TGCGAGCGGTTCACCACCTCCAAGCTGACCCGCTTCGAGGATTTGTCCCA
GATAGCAACATTTGGCTTCAGAGGAGAGGCCTTGGCCAGCATTAGTCATG
TGGCGCACCTAAGCATCCAGACCAAGACGGCTAAGGAGAAGTGCGGCTAC
AAGGCCACCTACGCGGATGGCAAGCTCCAGGGTCAGCCGAAGCCGTGTGC
CGGAAACCAAGGCACGATCATTTGCATAGAGGATCTGTTCTACAACATGC
CGCAAAGGAGGCAGGCACTCCGTTCGCCGGCCGAGGAGTTCCAGAGATTG
TCCGAGGTTCTGGCTAGGTACGCTGTCCACAATCCAAGGGTGGGCTTCAC
TCTCCGCAAGCAGGGAGACGCGCAACCTGCCCTGCGGACACCAGTGGCCA
GTTCCCGATCCGAAAACATCCGCATCATTTACGGGGCAGCAATTTCCAAG
GAGCTGCTGGAGTTTAGCCACCGCGATGAGGTTTACAAGTTCGAGGCCGA
GTGTCTGATCACTCAGGTTAACTATTCGGCCAAAAAGTGTCAGATGCTGC
TGTTCATCAACCAGCGACTGGTGGAGTCCACAGCTCTCAGGACCTCCGTG
GACTCGATTTATGCCACATACCTGCCCCGTGGCCACCATCCTTTCGTATA
TATGAGCCTGACGCTGCCGCCACAGAACTTGGACGTGAATGTCCATCCCA
CCAAGCATGAGGTGCACTTTCTCTACCAGGAAGAGATTGTGGATAGCATT
AAGCAGCAGGTTGAAGCCCGACTCCTAGGCAGCAATGCCACGAGGACGTT
CTACAAACAGCTAAGGCTACCAGGAGCCCCCGACCTGGATGAAACCCAGT
TGGCTGATAAAACGCAACGCATTTATCCCAAGGAGATGGTGCGTACTGAC
TCCACAGAGCAAAAGCTGGATAAGTTTTTGGCGCCTCTGGTCAAAAGTGA
CTCAGGCGTATCCTCCAGTTCCTCCCAGGAAGCGTCTCGTCTGCCAGAAG
AGAGTTTTCGCGTTACAGCGGCAAAAAAATCACGAGAAGTGCGTTTGAGC
AGCGTGCTAGACATGAGGAAGCGCGTGGAGCGGCAGTGCAGCGTTCAGCT
GAGGAGCACGCTCAAAAACTTGGTCTATGTGGGCTGTGTGGATGAGAGGC
GAGCCCTGTTCCAGCATGAAACGCGCCTTTATATGTGCAACACACGGTCG
TTTAGTGAGGAACTGTTCTATCAGCGGATGATTTACGAGTTTCAAAACTG
CTCGGAAATCACAATAAGTCCGCCATTGCCTCTCAAGGAGCTGCTAATCT
TGTCGCTGGAAAGCGAAGCCGCCGGCTGGACGCCCGAAGACGGGGATAAG
GCTGAGCTGGCGGACGGTGCTGCGGACATTCTTCTGAAAAAGGCGCCCAT
CATGAGAGAGTATTTCGGGCTGCGCATCTCGGAGGATGGAATGCTCGAAT
CTCTGCCCAGTTTGCTGCACCAGCATCGACCTTGTGTGGCCCACCTGCCT
GTTTACCTGCTCCGCTTGGCCACCGAAGTGGACTGGGAGCAGGAGACACG
ATGCTTCGAGACATTCTGTAGGGAAACTGCTCGATTTTACGCGCAATTGG
ATTGGCGGGAAGGTGCGACTGCGGGCTTTTCCAGATGGACAATGGAACAC
GTTCTATTTCCTGCCTTTAAAAAATATCTTCTGCCACCACCACGCATCAA
GGATCAGATCTACGAGCTCACTAACCTGCCCACTCTGTACAAGGTGTTCG
AGCGGTGCTAGAAGCTTTCTAGACCAT
BS27310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlh1-RA | 1995 | CG11482-PA | 1..1995 | 17..2011 | 9975 | 100 | Plus |
| Mlh1-RB | 1992 | CG11482-PB | 1..1992 | 17..2011 | 9865 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlh1-RA | 2071 | CG11482-RA | 19..2014 | 16..2011 | 9980 | 100 | Plus |
| Mlh1-RB | 2068 | CG11482-RB | 19..2011 | 16..2011 | 9870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8171165..8172344 | 832..2011 | 5900 | 100 | Plus |
| 2R | 25286936 | 2R | 8170292..8171109 | 16..833 | 4090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:32 has no hits.
BS27310.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:05:04 Download gff for
BS27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlh1-RA | 258..2252 | 17..2011 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:34 Download gff for
BS27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlh1-RA | 20..2014 | 17..2011 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:35 Download gff for
BS27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlh1-RA | 20..2014 | 17..2011 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:35 Download gff for
BS27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8171167..8172344 | 834..2011 | 100 | | Plus |
| 2R | 8170293..8171109 | 17..833 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:34 Download gff for
BS27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4057798..4058614 | 17..833 | 100 | -> | Plus |
| arm_2R | 4058672..4059849 | 834..2011 | 100 | | Plus |
BS27310.pep Sequence
Translation from 16 to 2010
> BS27310.pep
MAEYLQPGVIRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQ
VQVKAGGLKLLQIQDNGTGIRREDLAIVCERFTTSKLTRFEDLSQIATFG
FRGEALASISHVAHLSIQTKTAKEKCGYKATYADGKLQGQPKPCAGNQGT
IICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHNPRVGFTLRKQG
DAQPALRTPVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECLITQ
VNYSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTL
PPQNLDVNVHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLR
LPGAPDLDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKSDSGVSS
SSSQEASRLPEESFRVTAAKKSREVRLSSVLDMRKRVERQCSVQLRSTLK
NLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCSEITI
SPPLPLKELLILSLESEAAGWTPEDGDKAELADGAADILLKKAPIMREYF
GLRISEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETF
CRETARFYAQLDWREGATAGFSRWTMEHVLFPAFKKYLLPPPRIKDQIYE
LTNLPTLYKVFERC*
BS27310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlh1-PA | 664 | CG11482-PA | 1..664 | 1..664 | 3412 | 100 | Plus |
| Mlh1-PB | 663 | CG11482-PB | 1..663 | 1..664 | 3391 | 99.7 | Plus |
| Pms2-PA | 899 | CG8169-PA | 25..436 | 8..382 | 314 | 24.1 | Plus |
