BS27316.complete Sequence
458 bp assembled on 2011-09-16
GenBank Submission: KX803519
> BS27316.complete
GAAGTTATCAGTCGACATGGTCAAATACCCACTGATACTACTTTTGATTG
GCTGTGCCGCTGCCCAGGAACCAAGGCGCGATGGAGAGTGGCCTCCGCCA
GCGATTTTAAAACTGGGCAAGCACTTCCATGACATTTGTGCTCCCAAAAC
TGGCGTTACTGATGAGGCCATCAAGGAGTTCAGCGATGGGCAAATTCATG
AGGACGAGGCCCTCAAGTGCTATATGAACTGCCTCTTCCACGAGTTCGAG
GTGGTCGACGACAATGGGGATGTCCACATGGAGAAGGTCTTGAACGCCAT
TCCGGGAGAAAAGCTGAGGAACATTATGATGGAGGCTTCCAAGGGATGCA
TTCATCCTGAGGGCGACACCCTGTGCCACAAAGCCTGGTGGTTCCACCAA
TGCTGGAAGAAGGCTGATCCTGTCCACTACTTTTTGGTCTAAAAGCTTTC
TAGACCAT
BS27316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83b-RA | 426 | CG11422-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
| Obp83a-RC | 525 | CG11421-PC | 253..519 | 167..436 | 460 | 78.9 | Plus |
| Obp83a-RB | 465 | CG11421-PB | 193..459 | 167..436 | 460 | 78.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83b-RA | 528 | CG11422-RA | 15..441 | 17..443 | 2135 | 100 | Plus |
| Obp83a-RC | 823 | CG11421-RC | 408..674 | 167..436 | 460 | 78.9 | Plus |
| Obp83a-RB | 885 | CG11421-RB | 470..736 | 167..436 | 460 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5976264..5976543 | 443..164 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 5972374..5972624 | 420..167 | 455 | 79.5 | Minus |
| 3R | 32079331 | 3R | 5976594..5976671 | 164..87 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 5976732..5976803 | 88..17 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:34:01 has no hits.
BS27316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:55 Download gff for
BS27316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-E-RA | 15..438 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:23 Download gff for
BS27316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 15..438 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:50 Download gff for
BS27316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 15..438 | 17..440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:50 Download gff for
BS27316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5976267..5976542 | 165..440 | 100 | <- | Minus |
| 3R | 5976594..5976669 | 89..164 | 100 | <- | Minus |
| 3R | 5976732..5976803 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:23 Download gff for
BS27316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1801989..1802264 | 165..440 | 100 | <- | Minus |
| arm_3R | 1802316..1802391 | 89..164 | 100 | <- | Minus |
| arm_3R | 1802454..1802525 | 17..88 | 100 | | Minus |
BS27316.pep Sequence
Translation from 16 to 441
> BS27316.pep
MVKYPLILLLIGCAAAQEPRRDGEWPPPAILKLGKHFHDICAPKTGVTDE
AIKEFSDGQIHEDEALKCYMNCLFHEFEVVDDNGDVHMEKVLNAIPGEKL
RNIMMEASKGCIHPEGDTLCHKAWWFHQCWKKADPVHYFLV*
BS27316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83b-PA | 141 | CG11422-PA | 1..141 | 1..141 | 795 | 100 | Plus |
| Obp83a-PB | 154 | CG11421-PB | 26..153 | 9..140 | 524 | 70.5 | Plus |
| Obp83a-PA | 154 | CG11421-PA | 26..153 | 9..140 | 524 | 70.5 | Plus |
| Obp83a-PC | 174 | CG11421-PC | 46..173 | 9..140 | 524 | 70.5 | Plus |
