Clone BS27317 Report

Search the DGRC for BS27317

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptAcp62F-RA
Protein status:BS27317.pep: gold
Sequenced Size:380

Clone Sequence Records

BS27317.complete Sequence

380 bp assembled on 2011-09-07

GenBank Submission: KX804137

> BS27317.complete
GAAGTTATCAGTCGACATGACGGACATGTGGAGCTTGAAGATCTGTGCCT
GTCTGGGCCTTCTATTACTTTTCAAACCCATCGACTCCATGGGATGGCAA
GGACCTAAAGTTGACTGTACGGCCAACGGAACTCAGACGGAGTGTCCTGT
AGCATGTCCTGAAACCTGCGAGTACTCCGGCAATGGACCCTGCGTCAAGA
TGTGCGGAGCTCCTTGTGTGTGTAAGCCGGGATATGTTATCAATGAGAGG
ATTCCGGCCTGTGTTCTGCGATCCGATTGCCCAAAAGATGTTGTTCGAAA
GGAAGATATGCTACTGGGTGTATCGAACTTTAAGTGCTTTAGCAGAAATT
ACAACTGTTCTTAGAAGCTTTCTAGACCAT

BS27317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acp62F-RA 348 CG1262-PA 1..348 17..364 1725 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Acp62F-RA 479 CG1262-RA 24..373 17..366 1735 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2739773..2740122 17..366 1735 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 01:50:46 has no hits.

BS27317.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:26 Download gff for BS27317.complete
Subject Subject Range Query Range Percent Splice Strand
Acp62F-RA 24..371 17..364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:16 Download gff for BS27317.complete
Subject Subject Range Query Range Percent Splice Strand
Acp62F-RA 24..371 17..364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:53 Download gff for BS27317.complete
Subject Subject Range Query Range Percent Splice Strand
Acp62F-RA 24..371 17..364 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:53 Download gff for BS27317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2739773..2740120 17..364 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:16 Download gff for BS27317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2739773..2740120 17..364 99   Plus

BS27317.pep Sequence

Translation from 16 to 363

> BS27317.pep
MTDMWSLKICACLGLLLLFKPIDSMGWQGPKVDCTANGTQTECPVACPET
CEYSGNGPCVKMCGAPCVCKPGYVINERIPACVLRSDCPKDVVRKEDMLL
GVSNFKCFSRNYNCS*

BS27317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Acp62F-PA 115 CG1262-PA 1..115 1..115 657 100 Plus
CG33259-PA 119 CG33259-PA 24..107 31..115 301 60 Plus
CG5267-PA 178 CG5267-PA 106..171 31..97 181 50.7 Plus
CG34189-PA 122 CG34189-PA 53..110 34..92 170 47.5 Plus