BS27336.complete Sequence
581 bp assembled on 2011-09-16
GenBank Submission: KX800356
> BS27336.complete
GAAGTTATCAGTCGACATGCCGAATCGCGCGACGCGGAAGAAATATCGCC
GGATTCGACTCCACATTTTCCTGGCATTATCCCTATGGTTCCTGATCGAG
GCTCATCCCGTCGAAGGAACACGGTGCAGGAATCCCTATGAGAGGGTACG
GGAAAACTATTGCTACTTCGTTGCTGACGAGGAACCGCTGCACACATCGT
TCCATAACTTTTGCTATCAGGACAAGCGCACCTCACGAGTTTGCCTGGAT
AGTGACGAGGAAATGCGCGTTCTGGCCCATCACCTGGCCAACTTGGGCTA
CCCGAACGGCACGCAGTTCTGGAGCGCCGGGCATCGATGGCCGGGTGATA
ACCGCTTCTACTGGAACTACTTTGGCAGAGCCCGACCGCTCAACTACTCC
AACTGGGCGGTGGACGAGCCGACGCCCCAAATGGGCCGCAATTGCCTGAT
CCTCACTCTCCAGGGTGGAGAACTCATCATGAGCAGTGAGTCCTGCTACA
CCCGAGCGGTCGATATCTGCGAACAGACGCTGAACGGCACGGATTCCCGT
CCCGTAATCCACTGAAAGCTTTCTAGACCAT
BS27336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13086-RB | 549 | CG13086-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG13086-RA | 549 | CG13086-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG13086-RC | 504 | CG13086-PC | 129..504 | 190..565 | 1880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13086-RB | 690 | CG13086-RB | 20..568 | 17..565 | 2745 | 100 | Plus |
CG13086-RA | 617 | CG13086-RA | 20..568 | 17..565 | 2745 | 100 | Plus |
CG13086-RC | 572 | CG13086-RC | 148..523 | 190..565 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19364973..19365348 | 190..565 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 19364394..19364567 | 17..190 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:34:59 has no hits.
BS27336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:57 Download gff for
BS27336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13086-RA | 1..548 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:40 Download gff for
BS27336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13086-RA | 20..567 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:05 Download gff for
BS27336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13086-RA | 20..567 | 17..564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:05 Download gff for
BS27336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19364394..19364567 | 17..190 | 100 | -> | Plus |
2L | 19364974..19365347 | 191..564 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:40 Download gff for
BS27336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19364394..19364567 | 17..190 | 100 | -> | Plus |
arm_2L | 19364974..19365347 | 191..564 | 100 | | Plus |
BS27336.pep Sequence
Translation from 16 to 564
> BS27336.pep
MPNRATRKKYRRIRLHIFLALSLWFLIEAHPVEGTRCRNPYERVRENYCY
FVADEEPLHTSFHNFCYQDKRTSRVCLDSDEEMRVLAHHLANLGYPNGTQ
FWSAGHRWPGDNRFYWNYFGRARPLNYSNWAVDEPTPQMGRNCLILTLQG
GELIMSSESCYTRAVDICEQTLNGTDSRPVIH*
BS27336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13086-PB | 182 | CG13086-PB | 1..182 | 1..182 | 1019 | 100 | Plus |
CG13086-PA | 182 | CG13086-PA | 1..182 | 1..182 | 1019 | 100 | Plus |
CG13086-PC | 167 | CG13086-PC | 1..167 | 1..182 | 909 | 91.8 | Plus |