Clone BS27336 Report

Search the DGRC for BS27336

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG13086-RA
Protein status:BS27336.pep: full length peptide match
Sequenced Size:581

Clone Sequence Records

BS27336.complete Sequence

581 bp assembled on 2011-09-16

GenBank Submission: KX800356

> BS27336.complete
GAAGTTATCAGTCGACATGCCGAATCGCGCGACGCGGAAGAAATATCGCC
GGATTCGACTCCACATTTTCCTGGCATTATCCCTATGGTTCCTGATCGAG
GCTCATCCCGTCGAAGGAACACGGTGCAGGAATCCCTATGAGAGGGTACG
GGAAAACTATTGCTACTTCGTTGCTGACGAGGAACCGCTGCACACATCGT
TCCATAACTTTTGCTATCAGGACAAGCGCACCTCACGAGTTTGCCTGGAT
AGTGACGAGGAAATGCGCGTTCTGGCCCATCACCTGGCCAACTTGGGCTA
CCCGAACGGCACGCAGTTCTGGAGCGCCGGGCATCGATGGCCGGGTGATA
ACCGCTTCTACTGGAACTACTTTGGCAGAGCCCGACCGCTCAACTACTCC
AACTGGGCGGTGGACGAGCCGACGCCCCAAATGGGCCGCAATTGCCTGAT
CCTCACTCTCCAGGGTGGAGAACTCATCATGAGCAGTGAGTCCTGCTACA
CCCGAGCGGTCGATATCTGCGAACAGACGCTGAACGGCACGGATTCCCGT
CCCGTAATCCACTGAAAGCTTTCTAGACCAT

BS27336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13086-RB 549 CG13086-PB 1..549 17..565 2745 100 Plus
CG13086-RA 549 CG13086-PA 1..549 17..565 2745 100 Plus
CG13086-RC 504 CG13086-PC 129..504 190..565 1880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13086-RB 690 CG13086-RB 20..568 17..565 2745 100 Plus
CG13086-RA 617 CG13086-RA 20..568 17..565 2745 100 Plus
CG13086-RC 572 CG13086-RC 148..523 190..565 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19364973..19365348 190..565 1880 100 Plus
2L 23513712 2L 19364394..19364567 17..190 870 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:34:59 has no hits.

BS27336.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:57 Download gff for BS27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG13086-RA 1..548 17..564 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:40 Download gff for BS27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG13086-RA 20..567 17..564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:05 Download gff for BS27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG13086-RA 20..567 17..564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:05 Download gff for BS27336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19364394..19364567 17..190 100 -> Plus
2L 19364974..19365347 191..564 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:40 Download gff for BS27336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19364394..19364567 17..190 100 -> Plus
arm_2L 19364974..19365347 191..564 100   Plus

BS27336.pep Sequence

Translation from 16 to 564

> BS27336.pep
MPNRATRKKYRRIRLHIFLALSLWFLIEAHPVEGTRCRNPYERVRENYCY
FVADEEPLHTSFHNFCYQDKRTSRVCLDSDEEMRVLAHHLANLGYPNGTQ
FWSAGHRWPGDNRFYWNYFGRARPLNYSNWAVDEPTPQMGRNCLILTLQG
GELIMSSESCYTRAVDICEQTLNGTDSRPVIH*

BS27336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13086-PB 182 CG13086-PB 1..182 1..182 1019 100 Plus
CG13086-PA 182 CG13086-PA 1..182 1..182 1019 100 Plus
CG13086-PC 167 CG13086-PC 1..167 1..182 909 91.8 Plus