BS27337.complete Sequence
584 bp assembled on 2011-09-07
GenBank Submission: KX805524
> BS27337.complete
GAAGTTATCAGTCGACATGGGCTCCTCTTTATGTCCCGTCTCTTATCTGG
CGGTCTTGGCAATTATCGTCCTAACCAGTAATATTACAGTCCAGGCTAAA
AGGACATTCAGGATCCAGAAATTAGAAAAGGTGACTGAGGATACCTCATA
TCTGCGCAGTCGTCTGCGTATCGCTGAGTCCGAGGAAAATGAGTTGAAAG
TCAGCGGATATCTCGATCTGAATCAACGACTCGACAATGATTGGACGGTT
GTGCTTAAGGTTTCAAGATCCCCGGATAGCGATGGAGACTACGAGAAGGT
TTTGACATTCGAAATGCAGCTTTGCGACTTTATGAAGAGCTACTACAAGG
ATATCTTTTACGAACGGATCAAGGAATACTCGAATGCCCCGCATCCCAGC
AGCTGTCCTCTGCCCAAGGAACGCTATGTACTAGAGGACTATCCCTTCAA
TGTCAAGTTGCTCAAAAAGCTGATGAGTCCGGGCTTCTATCGCATAAAGT
ATACCCTCAAGAATGAAGAGACTAAAATATTATCGTACGTTCTGGATTTG
GAGTTGGAGGAGAACTAAAAGCTTTCTAGACCAT
BS27337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheA87a-RA | 552 | CG14379-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheA87a-RA | 643 | CG14379-RA | 22..573 | 17..568 | 2760 | 100 | Plus |
Lip3-RA | 1434 | CG8823-RA | 1398..1434 | 568..532 | 185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13369955..13370276 | 247..568 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 13369669..13369901 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:50 has no hits.
BS27337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 13:36:24 Download gff for
BS27337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheA87a-RA | 1..550 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:52 Download gff for
BS27337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheA87a-RA | 22..571 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:28 Download gff for
BS27337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheA87a-RA | 22..571 | 17..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:28 Download gff for
BS27337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13369669..13369899 | 17..247 | 100 | -> | Plus |
3R | 13369956..13370274 | 248..566 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:52 Download gff for
BS27337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9195391..9195621 | 17..247 | 100 | -> | Plus |
arm_3R | 9195678..9195996 | 248..566 | 100 | | Plus |
BS27337.pep Sequence
Translation from 16 to 567
> BS27337.pep
MGSSLCPVSYLAVLAIIVLTSNITVQAKRTFRIQKLEKVTEDTSYLRSRL
RIAESEENELKVSGYLDLNQRLDNDWTVVLKVSRSPDSDGDYEKVLTFEM
QLCDFMKSYYKDIFYERIKEYSNAPHPSSCPLPKERYVLEDYPFNVKLLK
KLMSPGFYRIKYTLKNEETKILSYVLDLELEEN*
BS27337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheA87a-PA | 183 | CG14379-PA | 1..183 | 1..183 | 939 | 100 | Plus |