Clone BS27337 Report

Search the DGRC for BS27337

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCheA87a-RA
Protein status:BS27337.pep: gold
Sequenced Size:584

Clone Sequence Records

BS27337.complete Sequence

584 bp assembled on 2011-09-07

GenBank Submission: KX805524

> BS27337.complete
GAAGTTATCAGTCGACATGGGCTCCTCTTTATGTCCCGTCTCTTATCTGG
CGGTCTTGGCAATTATCGTCCTAACCAGTAATATTACAGTCCAGGCTAAA
AGGACATTCAGGATCCAGAAATTAGAAAAGGTGACTGAGGATACCTCATA
TCTGCGCAGTCGTCTGCGTATCGCTGAGTCCGAGGAAAATGAGTTGAAAG
TCAGCGGATATCTCGATCTGAATCAACGACTCGACAATGATTGGACGGTT
GTGCTTAAGGTTTCAAGATCCCCGGATAGCGATGGAGACTACGAGAAGGT
TTTGACATTCGAAATGCAGCTTTGCGACTTTATGAAGAGCTACTACAAGG
ATATCTTTTACGAACGGATCAAGGAATACTCGAATGCCCCGCATCCCAGC
AGCTGTCCTCTGCCCAAGGAACGCTATGTACTAGAGGACTATCCCTTCAA
TGTCAAGTTGCTCAAAAAGCTGATGAGTCCGGGCTTCTATCGCATAAAGT
ATACCCTCAAGAATGAAGAGACTAAAATATTATCGTACGTTCTGGATTTG
GAGTTGGAGGAGAACTAAAAGCTTTCTAGACCAT

BS27337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-RA 552 CG14379-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-RA 643 CG14379-RA 22..573 17..568 2760 100 Plus
Lip3-RA 1434 CG8823-RA 1398..1434 568..532 185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13369955..13370276 247..568 1610 100 Plus
3R 32079331 3R 13369669..13369901 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:50 has no hits.

BS27337.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 13:36:24 Download gff for BS27337.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 1..550 17..566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:52 Download gff for BS27337.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 22..571 17..566 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:28 Download gff for BS27337.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 22..571 17..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:28 Download gff for BS27337.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13369669..13369899 17..247 100 -> Plus
3R 13369956..13370274 248..566 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:52 Download gff for BS27337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9195391..9195621 17..247 100 -> Plus
arm_3R 9195678..9195996 248..566 100   Plus

BS27337.pep Sequence

Translation from 16 to 567

> BS27337.pep
MGSSLCPVSYLAVLAIIVLTSNITVQAKRTFRIQKLEKVTEDTSYLRSRL
RIAESEENELKVSGYLDLNQRLDNDWTVVLKVSRSPDSDGDYEKVLTFEM
QLCDFMKSYYKDIFYERIKEYSNAPHPSSCPLPKERYVLEDYPFNVKLLK
KLMSPGFYRIKYTLKNEETKILSYVLDLELEEN*

BS27337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-PA 183 CG14379-PA 1..183 1..183 939 100 Plus