Clone BS27338 Report

Search the DGRC for BS27338

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptGstE4-RA
Protein status:BS27338.pep: gold
Sequenced Size:701

Clone Sequence Records

BS27338.complete Sequence

701 bp assembled on 2011-09-07

GenBank Submission: KX803812

> BS27338.complete
GAAGTTATCAGTGGACATGGGTAAGATATCGCTATACGGCCTGGACGCAA
GTCCGCCAACACGGGCATGTCTGCTCACCCTGAAGGCACTGGATCTGCCC
TTCGAATTTGTGTTCGTCAATCTGTTCGAGAAGGAGAACTTTAGCGAGGA
CTTCTCGAAGAAGAATCCACAGCACACGGTGCCACTGCTGCAGGACGATG
ATGCCTGCATCTGGGACTCCCATGCCATCATGGCGTATCTGGTGGAAAAG
TACGCGCCAAGCGATGAGCTCTATCCCAAGGATCTGCTGCAGCGTGCCAA
AGTGGACCAATTGATGCACTTCGAGTCGGGTGTCATCTTCGAGTCTGCCC
TAAGGAGACTCACCCGTCCGGTGCTCTTCTTCGGCGAGCCCACCTTGCCC
CGCAATCAGGTGGATCACATCCTTCAGGTCTATGATTTCGTAGAGACCTT
TCTCGATGATCACGACTTCGTGGCCGGCGATCAGTTGACCATAGCCGATT
TCAGCATCGTATCGACCATCACCTCGATTGGTGTTTTCCTGGAGCTGGAT
CCGGCCAAGTACCCTAAGATTGCCGCCTGGCTGGAGAGGCTTAAGGAGCT
GCCCTACTACGAGGAGGCCAATGGCAAAGGAGCTGCCCAGTTCGTGGAGC
TCTTGAGGTCCAAAAACTTCACCATAGTTTCGTAAAAGCTTTCTAGACCA
T

BS27338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-RA 669 CG17525-PA 1..669 17..685 3345 100 Plus
GstE10-RB 723 CG17522-PB 145..318 161..334 270 77 Plus
GstE10-RA 723 CG17522-PA 145..318 161..334 270 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-RA 839 CG17525-RA 28..696 17..685 3345 100 Plus
GstE10-RB 1134 CG17522-RB 451..624 161..334 270 77 Plus
GstE10-RA 889 CG17522-RA 206..379 161..334 270 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18403275..18403943 17..685 3345 100 Plus
2R 25286936 2R 18397148..18397321 334..161 270 77 Minus
2R 25286936 2R 18404778..18404861 161..244 210 83.3 Plus
2R 25286936 2R 18407095..18407279 157..341 205 74.1 Plus
Blast to na_te.dros performed on 2014-11-27 01:53:42 has no hits.

BS27338.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:31 Download gff for BS27338.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 1..667 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:23 Download gff for BS27338.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 28..694 17..683 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:50 Download gff for BS27338.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 28..694 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:50 Download gff for BS27338.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18403275..18403941 17..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:23 Download gff for BS27338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14290780..14291446 17..683 100   Plus

BS27338.pep Sequence

Translation from 16 to 684

> BS27338.pep
MGKISLYGLDASPPTRACLLTLKALDLPFEFVFVNLFEKENFSEDFSKKN
PQHTVPLLQDDDACIWDSHAIMAYLVEKYAPSDELYPKDLLQRAKVDQLM
HFESGVIFESALRRLTRPVLFFGEPTLPRNQVDHILQVYDFVETFLDDHD
FVAGDQLTIADFSIVSTITSIGVFLELDPAKYPKIAAWLERLKELPYYEE
ANGKGAAQFVELLRSKNFTIVS*

BS27338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-PA 222 CG17525-PA 1..222 1..222 1151 100 Plus
GstE7-PA 223 CG17531-PA 1..222 1..222 727 63.2 Plus
GstE8-PB 222 CG17533-PB 1..219 1..219 707 58.9 Plus
GstE8-PA 222 CG17533-PA 1..219 1..219 707 58.9 Plus
GstE5-PA 222 CG17527-PA 1..222 1..222 704 57.7 Plus