BS27339.complete Sequence
767 bp assembled on 2011-09-08
GenBank Submission: KX805566
> BS27339.complete
GAAGTTATCAGTCGACATGAAAATATCTCGTTTTAAGAAGTCGCACAAAA
CTCTGGTGTTTTTTGCCAGCAATTTCGACTACCGGGAACCCTACCAAGTG
CTAATTGATGCCACCTTTTGCCAAGCAGCCCTTCAGCAAAAGATTGGCAT
AGATGAGCAGATTAAAAAGTACTTCCAGTGCGGCGTTAAGCTACTGACCA
CCCAGTGTGTTATTCTGGAGTCGGAATCCCTGGGTGCTCCTCTCACTGGA
GCCACATCCATCGTCAAGCGATTCCATGTCCACAAATGCGGACACGAAGG
AAAACCAGTCCCCGCTTCCGAATGCATCAAATCGATGACCAAAGACAATC
GCTATGTGGTTGCCTCGCAAGATCGTCTGCTGCAGGAGAGTCTTCGCAAG
ATTCCCGGACGTTGTCTGCTCTATCTGCACAAAGCCACTCCCGTCTTGGA
AGCACCATCTAAAGCCTCCAAGAAGTGGGTGCAACGACGGGCCAAAAACC
TAATGCTGGGCAAACAGGTCGAGAAAATCGACTACATGAAGGAGAAGCAG
GGACTGAAGCCAGCTGAAACTGCAGTCAAACCCAAGAAGCACAAAGGGCC
CAAGAACCCCAATCCATTATCCTGCAAGAAGAGCAAAAAGGACAAGGCGA
AGCAACAGCTCAAAGGAGTTGAGCAGACCGCAATAACCAAGGCGAAACGA
AAACGAGTCAAGATCCCAGCGCACGTCAAGGCAGCGCTAGGAAAAGATTA
GAAGCTTTCTAGACCAT
BS27339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17652-RB | 735 | CG17652-PB | 1..735 | 17..751 | 3660 | 99.9 | Plus |
CG17652-RA | 735 | CG17652-PA | 1..735 | 17..751 | 3660 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17652-RB | 1198 | CG17652-RB | 93..829 | 16..752 | 3670 | 99.9 | Plus |
CG17652-RA | 873 | CG17652-RA | 93..829 | 16..752 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1731402..1731817 | 752..337 | 2065 | 99.8 | Minus |
2L | 23513712 | 2L | 1731880..1732082 | 337..135 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 1732144..1732264 | 136..16 | 605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5346..5383 | 568..605 | 109 | 76.3 | Plus |
BS27339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-08 17:48:30 Download gff for
BS27339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17652-RA | 94..828 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:44 Download gff for
BS27339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17652-RA | 94..828 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:10 Download gff for
BS27339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17652-RA | 94..828 | 17..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:10 Download gff for
BS27339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1731880..1732080 | 137..337 | 100 | <- | Minus |
2L | 1732144..1732263 | 17..136 | 100 | | Minus |
2L | 1731403..1731816 | 338..751 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:44 Download gff for
BS27339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1731403..1731816 | 338..751 | 99 | <- | Minus |
arm_2L | 1731880..1732080 | 137..337 | 100 | <- | Minus |
arm_2L | 1732144..1732263 | 17..136 | 100 | | Minus |
BS27339.pep Sequence
Translation from 16 to 750
> BS27339.pep
MKISRFKKSHKTLVFFASNFDYREPYQVLIDATFCQAALQQKIGIDEQIK
KYFQCGVKLLTTQCVILESESLGAPLTGATSIVKRFHVHKCGHEGKPVPA
SECIKSMTKDNRYVVASQDRLLQESLRKIPGRCLLYLHKATPVLEAPSKA
SKKWVQRRAKNLMLGKQVEKIDYMKEKQGLKPAETAVKPKKHKGPKNPNP
LSCKKSKKDKAKQQLKGVEQTAITKAKRKRVKIPAHVKAALGKD*
BS27339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17652-PB | 244 | CG17652-PB | 1..244 | 1..244 | 1262 | 100 | Plus |
CG17652-PA | 244 | CG17652-PA | 1..244 | 1..244 | 1262 | 100 | Plus |