BS27341.complete Sequence
761 bp assembled on 2011-09-07
GenBank Submission: KX803115
> BS27341.complete
GAAGTTATCAGAGGACATGTTGATTGGATCCTGTTGGGTGTTGATCTTAT
TTGCACGAAGCTCCAATGGCATCTATAATGGAGTAGAGGCAAAGTTTGAC
TTCTGGACCTTTCTTGCCTCCGTGTGGGTAAGTGGATATCATGAGTGCGG
CGGTGCTGTGATCGACAGCCGAATTGTCCTAACAGCCGCCCAGTGCGTCA
AGAATAAGCCGGTGAAGAGAATCACAGTCCGTGTGGGAACGCCGGATATC
TATAGAGGTGGTAGAATTATCAGGGTAACAGCGCTGGTGGTTCATGAAAA
TTATAAGAATTGGGACAACGATATCGCCCTCTTATGGCTAGAGAAGCCAG
TGCTTTCCGTACGAGTGACCAAAATTCCACTGGCCACCAAAGAACCCTCT
GAAAACGAATATCCCAGCAATGCGGGATGGGGCGAAAAACTACTCGAGTC
CTACGTCGTGACTAGAAAACTGCAAAATGGCGTTACCAAAATCCGTCCCC
GGAGCATGTGCGCTGAAGAACTTGTTGAACCGGTTGGCGAGGAACTTCTT
TGCGCCTTTTACACCGAAAATGATATTTGTCCTGGCGATTATGGAGGTCC
CTTGGTCCTGGCCAACAAAGTGGTTGGCATCGCAGTGCAAGGACACGGCT
GCGGGTTTGCCGTTCTGCCATCACTTTACACGAACGTCTTCCACTACCTG
GAATGGATAGAAGAGAATGCAGAGAAACTAATCAAAAATAAATAAAAGCT
TTCTAGACCAT
BS27341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4271-RA | 729 | CG4271-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4271-RA | 764 | CG4271-RA | 12..742 | 17..747 | 3655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2285174..2285904 | 17..747 | 3655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:54:05 has no hits.
BS27341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:31 Download gff for
BS27341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4271-RA | 6..717 | 22..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:32 Download gff for
BS27341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4271-RA | 17..728 | 22..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:56 Download gff for
BS27341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4271-RA | 17..728 | 22..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:56 Download gff for
BS27341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2285179..2285890 | 22..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:32 Download gff for
BS27341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2285179..2285890 | 22..733 | 100 | | Plus |
BS27341.pep Sequence
Translation from 16 to 744
> BS27341.pep
MLIGSCWVLILFARSSNGIYNGVEAKFDFWTFLASVWVSGYHECGGAVID
SRIVLTAAQCVKNKPVKRITVRVGTPDIYRGGRIIRVTALVVHENYKNWD
NDIALLWLEKPVLSVRVTKIPLATKEPSENEYPSNAGWGEKLLESYVVTR
KLQNGVTKIRPRSMCAEELVEPVGEELLCAFYTENDICPGDYGGPLVLAN
KVVGIAVQGHGCGFAVLPSLYTNVFHYLEWIEENAEKLIKNK*
BS27341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4271-PA | 242 | CG4271-PA | 1..242 | 1..242 | 1288 | 100 | Plus |
| Ser6-PA | 259 | CG2071-PA | 17..258 | 9..236 | 305 | 33.9 | Plus |
| CG17239-PB | 248 | CG17239-PB | 5..248 | 7..242 | 304 | 30.8 | Plus |
| CG17239-PA | 248 | CG17239-PA | 5..248 | 7..242 | 304 | 30.8 | Plus |
| CG1304-PA | 260 | CG1304-PA | 27..258 | 15..236 | 295 | 33.8 | Plus |
