BS27347.complete Sequence
812 bp assembled on 2011-09-09
GenBank Submission: KX801073
> BS27347.complete
GAAGTTATCAGTCGACATGTGGCTGCGCGTAGCGATCGTTCTAGTTATAG
CCCTTGCGGCTGCCGTTCTGGCCCAAAACGATGGACGGTATCGTCCTCCG
CCGACAAGGGCGAGTGCCGGAGATGGTAGGTACCGCGGCGGTAACGATGG
ACGTTATCGCGGTGGAGGCGATGGACGATACTCGGGTGGCAACGATGGAC
GCTACGTGCACATGGACAACAAGTACAAGCACGACGATCGTCCTGGTGGG
GATTACTCCGGCGATGCAGGTCGCTATGTGGGGGACAAGAACAGGGGTGG
TGGAGGCGGTGGTGGCGGTGGTGGTGGTGGTGGAGGTGGATCCGGGGCAG
GTGGTGGTGGAGCAGCAGTTGTAGTGCCCAGAACCTCAGCCAGGCCTCAA
CCAAGACCCACCACTGCAGCGCCGCCGGCTATTGCCGATCCAACTGCCAA
TCTTCCCAAGGGACGTGGCACCGGCGAAGGAGGCAACGGATGGGCCATCA
TCCGCCAGGAAGACGATGTGGAGGTGGATGGCTATCACTATCTTTGGGAA
ACTGAGAACGGCATCTTAGGCGAGGAAAGTGGACGCATCGAAAAGCTGAC
CGAGGAGGAGGGACTTCGTTCCAAGGGATTCTACGAGTACACTGGACCCG
ACGGCATCCTCTACCGCGTGGACTATGTAGCAGACGACAATGGCTTTGTG
CCAAGTGCCGCCCACCTGCCCACAGCGCCACCACCACCGCCCTATGTGGA
AAAGTTACTCGCCTTTTTGGAAGCAAATGCCAAGACGAAGAAATAAAAGC
TTTCTAGACCAT
BS27347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ab-RA | 780 | CG30042-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ab-RA | 852 | CG30042-RA | 18..798 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12378527..12379041 | 34..548 | 2560 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12379089..12379342 | 544..797 | 1270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:00 has no hits.
BS27347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 09:01:19 Download gff for
BS27347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ab-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:48 Download gff for
BS27347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ab-RA | 18..788 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:55 Download gff for
BS27347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ab-RA | 18..788 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:55 Download gff for
BS27347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12378457..12378474 | 17..34 | 100 | -> | Plus |
| 2R | 12378528..12379036 | 35..543 | 100 | -> | Plus |
| 2R | 12379089..12379332 | 544..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:48 Download gff for
BS27347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8265962..8265979 | 17..34 | 100 | -> | Plus |
| arm_2R | 8266033..8266541 | 35..543 | 100 | -> | Plus |
| arm_2R | 8266594..8266837 | 544..787 | 100 | | Plus |
BS27347.pep Sequence
Translation from 16 to 795
> BS27347.pep
MWLRVAIVLVIALAAAVLAQNDGRYRPPPTRASAGDGRYRGGNDGRYRGG
GDGRYSGGNDGRYVHMDNKYKHDDRPGGDYSGDAGRYVGDKNRGGGGGGG
GGGGGGGGSGAGGGGAAVVVPRTSARPQPRPTTAAPPAIADPTANLPKGR
GTGEGGNGWAIIRQEDDVEVDGYHYLWETENGILGEESGRIEKLTEEEGL
RSKGFYEYTGPDGILYRVDYVADDNGFVPSAAHLPTAPPPPPYVEKLLAF
LEANAKTKK*
BS27347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ab-PA | 259 | CG30042-PA | 1..259 | 1..259 | 1409 | 100 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 5..226 | 2..249 | 308 | 34.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 5..226 | 2..249 | 308 | 34.9 | Plus |
| Cpr49Ac-PG | 315 | CG8502-PG | 11..243 | 5..256 | 259 | 30.8 | Plus |
| Cpr49Ac-PF | 315 | CG8502-PF | 11..243 | 5..256 | 259 | 30.8 | Plus |
