BS27348.complete Sequence
860 bp assembled on 2011-09-09
GenBank Submission: KX801349
> BS27348.complete
GAAGTTATCAGTCGACATGTCTTACCAAACCGGAGCGGTTTCTACACTCG
TCCTCGTCCTGTTGGCGTTATCCTTTTCGGAGGCAAGTTTACGCCGTCGG
GCCTTCACTTCAGAAAAATCCGAAACCGCGAATAAATTTAGCTCCCGAAT
CGTCGGAGGAGAAGAATCCGATGTCCTGGCGGCACCCTATCTAGTCTCGC
TCCAAAACGCCTATGGTAACCACTTTTGTGCCGGCTCCATTATCCACGAT
CAGTGGGTCATCACCGCGGCTAGTTGCCTGGCTGGATTGCGAAAGAACAA
CGTGCAGGTGGTGACCACCACCTATAATCACTGGGGATCGGAGGGCTGGA
TATACTCCGTGGAGGATATCGTCATGCACTGCAACTTCGACAGCCCCATG
TACCATAATGACATTGCCCTGATCAAGACGCATGCACTATTCGATTACGA
TGATGTCACTCAGAATATCACAATCGCTCCGTTGGAGGATTTGACCGATG
GTGAAACGCTAACCATGTACGGATACGGCAGCACGGAGATCGGAGGAGAT
TTCTCATGGCAGCTGCAGCAGTTGGATGTAACCTATGTCGCGCCGGAAAA
GTGCAATGCCACGTACGGCGGTACTCCAGATCTGGATGTGGGTCACCTTT
GTGCCGTGGGAAAGGTGGGAGCCGGAGCATGTCATGGAGATACCGGAGGA
CCCATCGTTGACAGTCGTGGTCGCTTGGTGGGCGTTGGTAACTGGGGCGT
TCCGTGCGGCTATGGATTTCCCGATGTTTTTGCCCGCATTAGCTTTTACT
ACAGCTGGATTATATCAACGATTAACGGATGTGCTATTTCCTAAAAGCTT
TCTAGACCAT
BS27348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-RA | 828 | CG31267-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-RA | 921 | CG31267-RA | 24..851 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17134585..17135213 | 216..844 | 3145 | 100 | Plus |
| 3R | 32079331 | 3R | 17134220..17134419 | 17..216 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:37 has no hits.
BS27348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 17:29:28 Download gff for
BS27348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..849 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:46 Download gff for
BS27348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..849 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:06 Download gff for
BS27348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..849 | 17..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:06 Download gff for
BS27348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17134220..17134419 | 17..216 | 100 | -> | Plus |
| 3R | 17134586..17135211 | 217..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:46 Download gff for
BS27348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12959942..12960141 | 17..216 | 100 | -> | Plus |
| arm_3R | 12960308..12960933 | 217..842 | 100 | | Plus |
BS27348.pep Sequence
Translation from 16 to 843
> BS27348.pep
MSYQTGAVSTLVLVLLALSFSEASLRRRAFTSEKSETANKFSSRIVGGEE
SDVLAAPYLVSLQNAYGNHFCAGSIIHDQWVITAASCLAGLRKNNVQVVT
TTYNHWGSEGWIYSVEDIVMHCNFDSPMYHNDIALIKTHALFDYDDVTQN
ITIAPLEDLTDGETLTMYGYGSTEIGGDFSWQLQQLDVTYVAPEKCNATY
GGTPDLDVGHLCAVGKVGAGACHGDTGGPIVDSRGRLVGVGNWGVPCGYG
FPDVFARISFYYSWIISTINGCAIS*
BS27348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-PA | 275 | CG31267-PA | 1..275 | 1..275 | 1473 | 100 | Plus |
| CG31266-PB | 282 | CG31266-PB | 11..282 | 11..275 | 640 | 44.1 | Plus |
| CG5246-PA | 272 | CG5246-PA | 37..261 | 40..265 | 496 | 42.5 | Plus |
| CG31265-PA | 266 | CG31265-PA | 34..260 | 42..271 | 494 | 43 | Plus |
| CG31269-PB | 273 | CG31269-PB | 3..261 | 9..271 | 463 | 39.2 | Plus |
