BS27351.complete Sequence
1199 bp assembled on 2011-09-09
GenBank Submission: KX801246
> BS27351.complete
GAAGTTATCAGTCGACATGTCGTACAAAGCGTTTGTCTTCTTTTGTCTCT
ATATTGACCTTGCCAAGGGACTAATTACATCCGAAATTATAGCCTCGCAC
AACTATCCGGTAGAAGTACACACAGTGCTCACACGAGATGGGTATTTACT
CGACGCGTTCCGGATACCGGGCTCTAAATTTTGTCAGCAATCTGGACCAA
AGCCGGCGGTTCTCTTTCAGCACGGAATGTCCGCGTCCTCGGACGTTTTC
CTGCTAAACGGACCTCAGGATTCATTGGCATTCATGTTGGCCGACGCCTG
CTTCGATGTGTGGCTGAGTAACTCAAGGGGCACTCGGTATTCCCGACGCC
ACGTGTCTTTGGATCCCTCTGATGAGGCCTTCTGGCGCTTCAGCTGGCAC
GAGATTGGAACGGAGGACGTGGCCGCTTTCATAGACTACATTCTGGACAC
CACGAAGCAGAGAGCGTTGCACTTCTTGGGTCACTCGCAGGGATGCACCA
CGCTGGTGGTGCTCCTCAGCATGCGACCGGAGTACAACAAGTTGGTCAAG
ACCGCAGTCCTATTAGCTCCGGCTGTCTTTATGCGCCACACAAGCACCCT
TTCGCAGACCGTCTTCAGGAGTTTCATAATGGCCATGCCCGACAAGGAGT
TCATGTACCACAACGGAGTTTTAAACAAACTCTTGAGTAATGTATGCGGG
CTATTCGTTGCCAGGGTGTTCTGCACAACCTTCTTCTTGATTTCCAACGG
AAAAATTTCCAAACACCTAAACACAAGCGTTATTCCTCTGATTGCCGCCA
CGCTTCCTGCGGGAGTTTCTTCTCGCCAGCCCAAGCACTTCATCCAGCTC
ACGGACAGCGGCAAGTTCAGACCATTCGATTTCGGGATCCTGAGGAACTT
GATCAACTACAAGAGCCTAGAACCTCCAGACTATACTTTGAGCAACGTCC
GTCCCCTGACGCCAGTCCACATATTCTACAGCGACGATGATAGTTCGACA
GCAAAGGAGGATATTCAAAACTTTGCCGCCAGAGTGCCGGAGGTGGTGAT
GCACCGGATCTCAACACCGGGCTGGCACCATACGGACTTCGTGCATTCCA
TGACCGTTGCTGACGTAATCAACAAGCCGGTCATTGAAATTTTTAGAAGC
TTTGAGCGACTCAGCAGTCCTACATTTTTATGAAAGCTTTCTAGACCAT
BS27351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1167 | CG11598-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| CG18530-RA | 1167 | CG18530-PA | 62..1138 | 81..1157 | 2880 | 84.5 | Plus |
| CG11600-RB | 1221 | CG11600-PB | 427..588 | 377..538 | 285 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1248 | CG11598-RB | 1..1170 | 17..1186 | 5850 | 100 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 65..1141 | 81..1157 | 2880 | 84.5 | Plus |
| CG11600-RB | 1330 | CG11600-RB | 440..601 | 377..538 | 285 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12635035..12635730 | 80..775 | 3480 | 100 | Plus |
| 3R | 32079331 | 3R | 12635795..12636205 | 776..1186 | 2055 | 100 | Plus |
| 3R | 32079331 | 3R | 12633483..12634177 | 81..775 | 1765 | 83.6 | Plus |
| 3R | 32079331 | 3R | 12634248..12634623 | 782..1157 | 1130 | 86.7 | Plus |
| 3R | 32079331 | 3R | 12634912..12634979 | 12..79 | 325 | 98.5 | Plus |
| 3R | 32079331 | 3R | 12637033..12637194 | 377..538 | 285 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12639039..12639193 | 383..537 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:03:48 has no hits.
BS27351.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 17:35:10 Download gff for
BS27351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1166 | 17..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:53 Download gff for
BS27351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1166 | 17..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:01 Download gff for
BS27351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1166 | 17..1182 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:01 Download gff for
BS27351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12634917..12634979 | 17..79 | 100 | -> | Plus |
| 3R | 12635035..12635730 | 80..775 | 100 | -> | Plus |
| 3R | 12635795..12636201 | 776..1182 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:53 Download gff for
BS27351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8460639..8460701 | 17..79 | 100 | -> | Plus |
| arm_3R | 8460757..8461452 | 80..775 | 100 | -> | Plus |
| arm_3R | 8461517..8461923 | 776..1182 | 100 | | Plus |
BS27351.pep Sequence
Translation from 16 to 1182
> BS27351.pep
MSYKAFVFFCLYIDLAKGLITSEIIASHNYPVEVHTVLTRDGYLLDAFRI
PGSKFCQQSGPKPAVLFQHGMSASSDVFLLNGPQDSLAFMLADACFDVWL
SNSRGTRYSRRHVSLDPSDEAFWRFSWHEIGTEDVAAFIDYILDTTKQRA
LHFLGHSQGCTTLVVLLSMRPEYNKLVKTAVLLAPAVFMRHTSTLSQTVF
RSFIMAMPDKEFMYHNGVLNKLLSNVCGLFVARVFCTTFFLISNGKISKH
LNTSVIPLIAATLPAGVSSRQPKHFIQLTDSGKFRPFDFGILRNLINYKS
LEPPDYTLSNVRPLTPVHIFYSDDDSSTAKEDIQNFAARVPEVVMHRIST
PGWHHTDFVHSMTVADVINKPVIEIFRSFERLSSPTFL*
BS27351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-PB | 388 | CG11598-PB | 1..388 | 1..388 | 2031 | 100 | Plus |
| CG18530-PA | 389 | CG18530-PA | 1..381 | 1..381 | 1609 | 77.4 | Plus |
| CG11608-PB | 430 | CG11608-PB | 44..407 | 17..380 | 1048 | 49.5 | Plus |
| CG11600-PB | 406 | CG11600-PB | 46..402 | 24..380 | 979 | 49.6 | Plus |
| CG31089-PA | 421 | CG31089-PA | 39..415 | 12..380 | 734 | 41 | Plus |
