BS27353.complete Sequence
1547 bp assembled on 2011-09-09
GenBank Submission: KX800521
> BS27353.complete
GAAGTTATCAGTCGACATGTTGCTAAGATCATTTCATTATATTCTGCTGA
ACTGGATTTTATTATTCCTATTCACAGTTTGCAAAGCAAAGAAAGCCGAA
AATGATGTAGTACAGGAAGTAATATACTCAAATTCCATTCGAGCCCTGTC
TGAACTTCGCGAGATTGAGAATTCCTATATGGAGCATTTAAACAACTATG
TTAGCTTTCTGCAACAAAAAATCAAAACTCTCAGAATTTTTATTAATTCT
TTAACTCCGAATTATTTGGATCACAAGGTGGATCGATATAAATATGTGTC
CAATCCCCTAAATTCCTTTGGACTTTTAAGGCGGGCTCATCAAGATTGGC
CCAAGTTGATTGCTTACTTAAAGGATCAAGGAAATATAAAAGTTGACATC
GAGGAAATGAATAAGCTAATCAATCGTACACCCCACGCAAATGATATGGA
AGAGGCCCTAATGGGAATGGATAGAATAGAACACTTCTACGACCTGAAGT
CATCGGATATGGCCCAGGGTCTTGTGGCAGGTCAACAGCTAAGTTCGCGA
ATGTCAGCTTCCGACTGCTTGGCTTTAGCAGACTATATGTACAAACGATC
AGAATTTAGACGTGCGGCTGAATGGTATCGAATAGCTTTAAGTGTCTTCA
CCAAACCAAAAAATAATATTGCATTTAAGTTCTATGCTCCAAAACGAAAA
GAGCTCGAAAAAATGTTTGTCATAAGTCGGCTTCAAGAAGGTTCCGTTGA
AAACTTAACTGACTGTCTGAAGGAACTTTCTCAAGACCCGAACAATTCAT
TGGTGCATCTAAGGCCAAGGAAATCGCCCACTATGATTGAACAGGGCTGC
CAGGGAAAGTTTCCACCAGGACCTCAACTAGTGTGTCGCTATAATAGCAC
CACCACTCCATTTATGCGAATAGCTCCTCTAAAGGAGGAGGAGATCAGCA
GAGACCCACTTATCTGGTTATATCACGACGTGATCTATGACAGTGAGATA
GCTCAGTTGACGAATGTGACCCGAGAGGAGATGATTCTGGGCACCACCAC
AAACTATACGACTCCAGATCGGGTGAATCGTCTCTTTCACATTAAAGTCA
CCGACGACGATGGCGGAAAGTTGGACAAAACGTTGGTAAATCGTATGGCA
GACATATCTGGCCTGGATGTGGGCAATACCACCACACTGGCCAGAATCAA
TTATGGACTTGGTGGTTATTTCCAAGAACACAGTGATTACATGGACATTA
AGCTTTATCCGGAACTGACTGAGGAAGGTGATCGATTAATGACATTCTTG
TTCTACATGACCGATGTTCCAGTGGGTGGCACCACAATCTTTCCCGGCGC
CCAACTTGCTATTCAGCCAAAGAAGGGATCCGCCCTCTTTTGGTACAACC
TCCACAATAATGGTGACCCAAATCTGCTGACCAGGCACGCCGTTTGTCCC
ACAATTGTAGGCAGCCGATGGGTGCTAGTCAAGAGCATGTTGAACTACGA
GCAGATGTTCAAGAAGCCCTGCTACAAGTAAAAGCTTTCTAGACCAT
BS27353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34345-RA | 1515 | CG34345-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34345-RA | 1777 | CG34345-RA | 12..1527 | 17..1532 | 7580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6624134..6624657 | 739..1262 | 2620 | 100 | Plus |
| 2L | 23513712 | 2L | 6623123..6623343 | 17..237 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 6623883..6624082 | 542..741 | 1000 | 100 | Plus |
| 2L | 23513712 | 2L | 6624828..6624993 | 1307..1472 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 6623404..6623558 | 238..392 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 6623679..6623831 | 391..543 | 765 | 100 | Plus |
| 2L | 23513712 | 2L | 6625049..6625109 | 1472..1532 | 305 | 100 | Plus |
| 2L | 23513712 | 2L | 6624722..6624767 | 1261..1306 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:05:14 has no hits.
BS27353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 17:46:50 Download gff for
BS27353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 6..1513 | 22..1529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:42 Download gff for
BS27353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 17..1524 | 22..1529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:36 Download gff for
BS27353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 17..1524 | 22..1529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:36 Download gff for
BS27353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6623885..6624081 | 544..740 | 100 | -> | Plus |
| 2L | 6623404..6623558 | 238..392 | 100 | -> | Plus |
| 2L | 6623681..6623831 | 393..543 | 100 | -> | Plus |
| 2L | 6623128..6623343 | 22..237 | 100 | -> | Plus |
| 2L | 6624136..6624656 | 741..1261 | 100 | -> | Plus |
| 2L | 6624723..6624767 | 1262..1306 | 100 | -> | Plus |
| 2L | 6624828..6624993 | 1307..1472 | 100 | -> | Plus |
| 2L | 6625050..6625106 | 1473..1529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:42 Download gff for
BS27353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6623128..6623343 | 22..237 | 100 | -> | Plus |
| arm_2L | 6623404..6623558 | 238..392 | 100 | -> | Plus |
| arm_2L | 6623681..6623831 | 393..543 | 100 | -> | Plus |
| arm_2L | 6623885..6624081 | 544..740 | 100 | -> | Plus |
| arm_2L | 6624136..6624656 | 741..1261 | 100 | -> | Plus |
| arm_2L | 6624723..6624767 | 1262..1306 | 100 | -> | Plus |
| arm_2L | 6624828..6624993 | 1307..1472 | 100 | -> | Plus |
| arm_2L | 6625050..6625106 | 1473..1529 | 100 | | Plus |
BS27353.pep Sequence
Translation from 16 to 1530
> BS27353.pep
MLLRSFHYILLNWILLFLFTVCKAKKAENDVVQEVIYSNSIRALSELREI
ENSYMEHLNNYVSFLQQKIKTLRIFINSLTPNYLDHKVDRYKYVSNPLNS
FGLLRRAHQDWPKLIAYLKDQGNIKVDIEEMNKLINRTPHANDMEEALMG
MDRIEHFYDLKSSDMAQGLVAGQQLSSRMSASDCLALADYMYKRSEFRRA
AEWYRIALSVFTKPKNNIAFKFYAPKRKELEKMFVISRLQEGSVENLTDC
LKELSQDPNNSLVHLRPRKSPTMIEQGCQGKFPPGPQLVCRYNSTTTPFM
RIAPLKEEEISRDPLIWLYHDVIYDSEIAQLTNVTREEMILGTTTNYTTP
DRVNRLFHIKVTDDDGGKLDKTLVNRMADISGLDVGNTTTLARINYGLGG
YFQEHSDYMDIKLYPELTEEGDRLMTFLFYMTDVPVGGTTIFPGAQLAIQ
PKKGSALFWYNLHNNGDPNLLTRHAVCPTIVGSRWVLVKSMLNYEQMFKK
PCYK*
BS27353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34345-PA | 504 | CG34345-PA | 1..504 | 1..504 | 2653 | 100 | Plus |
| CG32199-PB | 509 | CG32199-PB | 1..507 | 35..502 | 856 | 36.6 | Plus |
| CG32201-PB | 520 | CG32201-PB | 1..518 | 3..502 | 763 | 33.5 | Plus |
| CG18749-PC | 491 | CG18749-PC | 32..481 | 37..504 | 677 | 34.4 | Plus |
| CG18749-PB | 491 | CG18749-PB | 32..481 | 37..504 | 677 | 34.4 | Plus |
