Clone BS27354 Report

Search the DGRC for BS27354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG9997-RA
Protein status:BS27354.pep: full length peptide match
Sequenced Size:1025

Clone Sequence Records

BS27354.complete Sequence

1025 bp assembled on 2011-09-09

GenBank Submission: KX801814

> BS27354.complete
GAAGTTATCAGTCGACATGCTGCGACCACTGTGCATTATTCAGATCCTTT
TGCTCGCTTTCCTGGCGAACGAGTCGGAATCCTCGAACACTCATCTCCAT
CGCTATATGCTGGACACCTATAAGCCGCAGCACAATCGAAAAACCCAAAT
GAACTACAAACGACGCCGTACTGTAAGGAGCGATCACGAAATGGCTATCG
ATCCCAATAATCCAAATAATCCCAATAATCCAAATAATTCCGATAGTCCC
GATAATCCCAATAATCTCAATAATCCAAATAATCCGAATAATGACACAGT
ACAGTATGGACATTCCAAGGAGCCTGTAGTTACCTTGACCAATTCGGACA
AGAAGGTGCCGCTGCACGAGCTGATGGTGAGACTCTATCAGCAAAACAAA
TATATCTGCATGGGCACGGTGATATCCGAGATGCTAGTGATTACCACTAG
CACTTGTTTTAATTTGGCCAGCAGTGAAGTGGTCACGATGAAGATGTACG
ATGACGAAGTCCTCGAAGGGAAAAGAGTCGCTCTCAACCAGACCTACCTT
AAAGGAGCGGATCCCATGCTGGTTGCTATTCAACTAACCAAGTCCCCAAA
GAATTCCAAAGTGACTGGTGACACCGTGAAGCTGTGCGATTCGGAGCTAG
AAATATACGAGCCCATCGAGCTGCCACTGTGGATCAGGAGTCGCCACAGT
ATTCACTCGCAGACAACGTACATCATACCGATGCAGGCGTGCCGACTCCG
CATGAGGGATCCCGAAGCGATGGTCGCCACCGACACTATGATCTGCGTGA
AGAACATGAAGTATACGGCCCAGTGCCAGTTGGCCATGGGTAATCCCCTC
GTTCACGACGAACGCATCTGCGGCATCAATGTGGCTGGTCACAACTGTCC
CGCCTACACGGGCGTGGATCTATACATCAGGGTATACGATGCTCTCGCCT
TCTCGATAATGGGCATGGAAATCATTAAAAACTCCCGCATAGAAGATACC
ATTTTGTAAAAGCTTTCTAGACCAT

BS27354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-RB 993 CG9997-PB 1..993 17..1009 4965 100 Plus
CG9997-RA 993 CG9997-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-RB 1325 CG9997-RB 1..994 17..1010 4970 100 Plus
CG9997-RA 1030 CG9997-RA 1..994 17..1010 4970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28755986..28756979 1010..17 4970 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:04:37 has no hits.

BS27354.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 17:35:11 Download gff for BS27354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..991 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:20 Download gff for BS27354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..991 17..1007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:21 Download gff for BS27354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..991 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:21 Download gff for BS27354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28755989..28756979 17..1007 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:20 Download gff for BS27354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24581711..24582701 17..1007 100   Minus

BS27354.pep Sequence

Translation from 16 to 1008

> BS27354.pep
MLRPLCIIQILLLAFLANESESSNTHLHRYMLDTYKPQHNRKTQMNYKRR
RTVRSDHEMAIDPNNPNNPNNPNNSDSPDNPNNLNNPNNPNNDTVQYGHS
KEPVVTLTNSDKKVPLHELMVRLYQQNKYICMGTVISEMLVITTSTCFNL
ASSEVVTMKMYDDEVLEGKRVALNQTYLKGADPMLVAIQLTKSPKNSKVT
GDTVKLCDSELEIYEPIELPLWIRSRHSIHSQTTYIIPMQACRLRMRDPE
AMVATDTMICVKNMKYTAQCQLAMGNPLVHDERICGINVAGHNCPAYTGV
DLYIRVYDALAFSIMGMEIIKNSRIEDTIL*

BS27354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-PB 330 CG9997-PB 1..330 1..330 1742 100 Plus
CG9997-PA 330 CG9997-PA 1..330 1..330 1742 100 Plus
intr-PA 298 CG12558-PA 102..285 120..309 169 25.1 Plus
Sems-PA 275 CG10586-PA 59..270 120..320 150 24.2 Plus