BS27360.complete Sequence
888 bp assembled on 2011-09-16
GenBank Submission: KX804676
> BS27360.complete
GAAGTTATCAGTCGACATGGAACCTATACTGATAGAAAAATCTCAGTGGC
CAGAGCTCAGAGATTTGTACGCGAATGATAGAACTAATCTCACGGGATTC
GACTTAATCGAGTACTTTTTAAATTACATACCCTTATCCACAACCGAATC
CATAAAGATATATACAACTGATACGGATTGGAGAACACATGGCAGTTATA
TACTAATTCATTATTTGGAGAACAAGGCCTATATTTATATGAATACCATT
AAGGGAACCCCAGAAGATCTTGGCAAATTGTTGAACTCTCTAAAACTTAA
AGTGTTTCATTTAATCTGTGGCTATGAAGAACGATTCAAACCATTAGTTG
AGGCATATTGGCTGAATTTGGGTCAAGATTTGATTAATCTTGAACACCAG
GGCGCTATTGTTTACCACCTGCCAAGCACCGAAATTCCCAGTTGGAAACC
AAGTTTGAGTACCTCTTGCAAAGTGGCTTATATCACATCAAATCATGCCG
AATTGGTCGACAAACATTGGGCTTATCGTTCAGCTGATTCTATAACTATG
ATAAGGGGTTTTATGGAGAACAATCTCGCTGTTGGTGTTTTTGATAACCA
AGGAGAACCCCTAGCGTGGTGTCTAAGATCTCCTCATGGTAGTTTGAGTA
ACCTACACGTTTTATCCTCACATCGTCGAATGGGATTGGGTTCTTTGGCA
GTGCGCTTTATGGCTAATGAAATCAAGTTAAAGGGCTCAGAAGTTCTGGC
CACAGTTGTTCCCGAAAACGAGGGTTCGCAAAAAATGTTCGAGAAACTAG
GATTCAACAATATCAACAAACTCTACTGGGCAGTGATACCGTGCACTTTA
TAAAAGCTTTCTAGACCATTTGTTTGGCGCGCAAAGGG
BS27360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 837 | CG34010-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 876 | CG34010-RA | 18..855 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8010135..8010379 | 453..209 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 8009624..8009852 | 854..626 | 1145 | 100 | Minus |
| 2L | 23513712 | 2L | 8010444..8010635 | 208..17 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 8009905..8010080 | 627..452 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:39:44 has no hits.
BS27360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 11:07:45 Download gff for
BS27360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:08 Download gff for
BS27360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 18..855 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:27 Download gff for
BS27360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 18..855 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:27 Download gff for
BS27360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8009624..8009850 | 628..854 | 100 | <- | Minus |
| 2L | 8009905..8010078 | 454..627 | 100 | <- | Minus |
| 2L | 8010135..8010379 | 209..453 | 100 | <- | Minus |
| 2L | 8010444..8010635 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:08 Download gff for
BS27360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8009624..8009850 | 628..854 | 100 | <- | Minus |
| arm_2L | 8009905..8010078 | 454..627 | 100 | <- | Minus |
| arm_2L | 8010135..8010379 | 209..453 | 100 | <- | Minus |
| arm_2L | 8010444..8010635 | 17..208 | 100 | | Minus |
BS27360.pep Sequence
Translation from 16 to 852
> BS27360.pep
MEPILIEKSQWPELRDLYANDRTNLTGFDLIEYFLNYIPLSTTESIKIYT
TDTDWRTHGSYILIHYLENKAYIYMNTIKGTPEDLGKLLNSLKLKVFHLI
CGYEERFKPLVEAYWLNLGQDLINLEHQGAIVYHLPSTEIPSWKPSLSTS
CKVAYITSNHAELVDKHWAYRSADSITMIRGFMENNLAVGVFDNQGEPLA
WCLRSPHGSLSNLHVLSSHRRMGLGSLAVRFMANEIKLKGSEVLATVVPE
NEGSQKMFEKLGFNNINKLYWAVIPCTL*
BS27360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-PA | 278 | CG34010-PA | 1..278 | 1..278 | 1479 | 100 | Plus |
| CG12560-PB | 278 | CG12560-PB | 10..277 | 6..272 | 396 | 32.5 | Plus |
| CG12560-PC | 272 | CG12560-PC | 10..271 | 6..272 | 391 | 32.6 | Plus |
| CG17681-PA | 293 | CG17681-PA | 18..279 | 13..274 | 225 | 26 | Plus |
| CG5783-PA | 287 | CG5783-PA | 49..271 | 45..271 | 199 | 26.9 | Plus |
