BS27367.complete Sequence
392 bp assembled on 2011-09-07
GenBank Submission: KX805336
> BS27367.complete
GAAGTTATCAGTCGACATGCGTTCCTTCATCATCATCGCCCTCTTCGCAC
TGATTGCCGTGGCTGCCGCTCAAGGTGGACCCCAGGGCGGACCTCAGGGT
GGACCTCAGGGTGGACCTCAAGGTGGACCACAGGGCGGACCCCAGGGTGG
ACCTCAAGGTGGACCCCAGGGTGGTCCTCAGGGAGGACCCCAGGGTGGAC
CGCAGGGAGGACCCCAGGGTGGTCCTGGTGGACCCGGTGGACCCGGGGGA
CCGTGGGGACTGCCTCCAAATGCCACTCTTCCCAGCAACAGCACTACCAC
CACCACCACTTCAACGACCACCGAATCCAGCACCAGCACAACCACGGAAG
CCAGCACCGAGTCATCCCCTGCTTAAAAGCTTTCTAGACCAT
BS27367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13947-RA | 360 | CG13947-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
| CG13947-RA | 360 | CG13947-PA | 53..162 | 117..226 | 385 | 90 | Plus |
| CG13947-RA | 360 | CG13947-PA | 101..210 | 69..178 | 385 | 90 | Plus |
| CG13947-RA | 360 | CG13947-PA | 89..203 | 69..183 | 305 | 84.3 | Plus |
| CG13947-RA | 360 | CG13947-PA | 53..167 | 105..219 | 305 | 84.3 | Plus |
| CG13947-RA | 360 | CG13947-PA | 61..146 | 137..222 | 250 | 86 | Plus |
| CG13947-RA | 360 | CG13947-PA | 121..206 | 77..162 | 250 | 86 | Plus |
| CG13947-RA | 360 | CG13947-PA | 58..138 | 146..226 | 240 | 86.4 | Plus |
| CG13947-RA | 360 | CG13947-PA | 130..210 | 74..154 | 240 | 86.4 | Plus |
| CG12506-RA | 324 | CG12506-PA | 1..86 | 17..102 | 235 | 84.9 | Plus |
| CG13947-RA | 360 | CG13947-PA | 53..119 | 153..219 | 215 | 88.1 | Plus |
| CG13947-RA | 360 | CG13947-PA | 137..203 | 69..135 | 215 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13947-RA | 483 | CG13947-RA | 32..391 | 17..376 | 1800 | 100 | Plus |
| CG13947-RA | 483 | CG13947-RA | 84..193 | 117..226 | 385 | 90 | Plus |
| CG13947-RA | 483 | CG13947-RA | 132..241 | 69..178 | 385 | 90 | Plus |
| CG13947-RA | 483 | CG13947-RA | 84..198 | 105..219 | 305 | 84.3 | Plus |
| CG13947-RA | 483 | CG13947-RA | 120..234 | 69..183 | 305 | 84.3 | Plus |
| CG13947-RA | 483 | CG13947-RA | 92..177 | 137..222 | 250 | 86 | Plus |
| CG13947-RA | 483 | CG13947-RA | 152..237 | 77..162 | 250 | 86 | Plus |
| CG13947-RA | 483 | CG13947-RA | 89..169 | 146..226 | 240 | 86.4 | Plus |
| CG13947-RA | 483 | CG13947-RA | 161..241 | 74..154 | 240 | 86.4 | Plus |
| CG12506-RA | 471 | CG12506-RA | 49..134 | 17..102 | 235 | 84.9 | Plus |
| CG13947-RA | 483 | CG13947-RA | 84..150 | 153..219 | 215 | 88.1 | Plus |
| CG13947-RA | 483 | CG13947-RA | 168..234 | 69..135 | 215 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 779204..779563 | 17..376 | 1800 | 100 | Plus |
| 2L | 23513712 | 2L | 779256..779365 | 117..226 | 385 | 90 | Plus |
| 2L | 23513712 | 2L | 779304..779413 | 69..178 | 385 | 90 | Plus |
| 2L | 23513712 | 2L | 779256..779370 | 105..219 | 305 | 84.3 | Plus |
| 2L | 23513712 | 2L | 779292..779406 | 69..183 | 305 | 84.3 | Plus |
| 2L | 23513712 | 2L | 779264..779349 | 137..222 | 250 | 86 | Plus |
| 2L | 23513712 | 2L | 779324..779409 | 77..162 | 250 | 86 | Plus |
| 2L | 23513712 | 2L | 779261..779341 | 146..226 | 240 | 86.4 | Plus |
| 2L | 23513712 | 2L | 779333..779413 | 74..154 | 240 | 86.4 | Plus |
| 2L | 23513712 | 2L | 773595..773680 | 17..102 | 235 | 84.9 | Plus |
| 2L | 23513712 | 2L | 779256..779322 | 153..219 | 215 | 88.1 | Plus |
| 2L | 23513712 | 2L | 779340..779406 | 69..135 | 215 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:49:22 has no hits.
BS27367.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:23 Download gff for
BS27367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 4..361 | 17..374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:43 Download gff for
BS27367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 32..389 | 17..374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:25 Download gff for
BS27367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 32..389 | 17..374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:25 Download gff for
BS27367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 779204..779561 | 17..374 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:43 Download gff for
BS27367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 779204..779561 | 17..374 | 100 | | Plus |
BS27367.pep Sequence
Translation from 16 to 375
> BS27367.pep
MRSFIIIALFALIAVAAAQGGPQGGPQGGPQGGPQGGPQGGPQGGPQGGP
QGGPQGGPQGGPQGGPQGGPGGPGGPGGPWGLPPNATLPSNSTTTTTTST
TTESSTSTTTEASTESSPA*
BS27367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13947-PA | 119 | CG13947-PA | 1..119 | 1..119 | 650 | 100 | Plus |
| CG12506-PA | 107 | CG12506-PA | 1..107 | 1..113 | 361 | 67.3 | Plus |
| CG13946-PA | 99 | CG13946-PA | 1..99 | 1..112 | 335 | 63.7 | Plus |
| lcs-PA | 145 | CG12794-PA | 1..135 | 1..117 | 282 | 55.1 | Plus |
| CG10918-PA | 183 | CG10918-PA | 1..162 | 1..117 | 196 | 39 | Plus |
