BS27373.complete Sequence
959 bp assembled on 2011-09-16
GenBank Submission: KX800399
> BS27373.complete
GAAGTTATCAGTCGACATGCAGCGCCTGACGAAATCGTTACGTTCACTTC
CATTTCCCGCGGGAAAGATCCTGCGAACCCAATTGGTGGTCAGAAGGGAG
TACTCCTCGGAAATACCGGATCCCGTTGAACTAAGCTTCGATTCGTACAC
CGGCGAGAATCCAGAGACGAGTCCACCACTGCTCACATATCATGGACTCT
TTGGTTCCAAGCAAAATTGGCGAGGAATTAGCAAGGCTCTGGTGCGAAAA
GTTTCCCGAAAGGTGTACGCCATCGATGTGAGGAATCATGGCGAGAGTCC
ACATTCGAGTGTCCACAATTCCAAAGCGATGAGCGAGGATTTGCGTTTGT
TTATGGAGCAGCGCAGTCATCCGAATGCCGCCTGCATGGGTCACAGCATG
GGCGGCAGGTCCATGATGTACTTCGCTCGAAAATATCCCGAGTTGGTGGA
ACGTTTGATAGTGGTGGACATATCGCCAATTAGCGTGCCCCGTTCCACGG
GCGAGATGACGGAAATTTTCGACGCGATGGTCTCCCTGGACCTTTCGCCA
AGCATGTCCATGTCTGAGGGCAGGAAAATTGCACGGGAAAAACTACTGAA
AGCCACCGAAGACGAGACCGTTGACTTTATCATGCTGAATCTCCGAAAAA
ATCCTGACACCGGCGCTTTCTCTTGGGCCTGCAATGCCCATGTTCTTCGT
GAATTCCTCACCCGCTTCGACAAATATCAGAGTAATTTGGAGGAACTGCC
GCCGTACACGGGACCCACTACGTTCATTTGCGGCACGCGATCACCTTACA
TGAGACGCGAGCAATGGCCACAGATACAGAAAATGTTTCCCAATTCTGAG
ATCCACTGGCTGGATGCCGGACATTTAGTGCACTTTGAAAAGCCGCAGGA
GTTTCTAACAATAGTCAGCGAGTTCCTGAATAGAACTGAGTAGAAGCTTT
CTAGACCAT
BS27373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2059-RB | 927 | CG2059-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
| CG2059-RA | 927 | CG2059-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2059-RB | 1141 | CG2059-RB | 147..1074 | 17..944 | 4640 | 100 | Plus |
| CG2059-RA | 1197 | CG2059-RA | 203..1130 | 17..944 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7286853..7287101 | 17..265 | 1245 | 100 | Plus |
| X | 23542271 | X | 7287407..7287640 | 433..666 | 1155 | 99.6 | Plus |
| X | 23542271 | X | 7287170..7287345 | 261..436 | 880 | 100 | Plus |
| X | 23542271 | X | 7287909..7288050 | 803..944 | 710 | 100 | Plus |
| X | 23542271 | X | 7287709..7287846 | 667..804 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:24 has no hits.
BS27373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 14:18:44 Download gff for
BS27373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RB | 147..1073 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for
BS27373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 203..1129 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:27 Download gff for
BS27373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 203..1129 | 17..943 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:27 Download gff for
BS27373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7287411..7287640 | 437..666 | 100 | -> | Plus |
| X | 7287709..7287846 | 667..804 | 100 | -> | Plus |
| X | 7287911..7288049 | 805..943 | 100 | | Plus |
| X | 7286853..7287098 | 17..262 | 100 | -> | Plus |
| X | 7287172..7287345 | 263..436 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:43 Download gff for
BS27373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7181944..7182082 | 805..943 | 100 | | Plus |
| arm_X | 7180886..7181131 | 17..262 | 100 | -> | Plus |
| arm_X | 7181205..7181378 | 263..436 | 100 | -> | Plus |
| arm_X | 7181444..7181673 | 437..666 | 100 | -> | Plus |
| arm_X | 7181742..7181879 | 667..804 | 100 | -> | Plus |
BS27373.pep Sequence
Translation from 16 to 942
> BS27373.pep
MQRLTKSLRSLPFPAGKILRTQLVVRREYSSEIPDPVELSFDSYTGENPE
TSPPLLTYHGLFGSKQNWRGISKALVRKVSRKVYAIDVRNHGESPHSSVH
NSKAMSEDLRLFMEQRSHPNAACMGHSMGGRSMMYFARKYPELVERLIVV
DISPISVPRSTGEMTEIFDAMVSLDLSPSMSMSEGRKIAREKLLKATEDE
TVDFIMLNLRKNPDTGAFSWACNAHVLREFLTRFDKYQSNLEELPPYTGP
TTFICGTRSPYMRREQWPQIQKMFPNSEIHWLDAGHLVHFEKPQEFLTIV
SEFLNRTE*
BS27373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2059-PB | 308 | CG2059-PB | 1..308 | 1..308 | 1615 | 100 | Plus |
| CG2059-PA | 308 | CG2059-PA | 1..308 | 1..308 | 1615 | 100 | Plus |
| CG14717-PB | 306 | CG14717-PB | 31..299 | 39..303 | 379 | 33.7 | Plus |
| CG14717-PA | 306 | CG14717-PA | 31..299 | 39..303 | 379 | 33.7 | Plus |
