BS27376.complete Sequence
2607 bp assembled on 2011-10-14
GenBank Submission: KX802194
> BS27376.complete
GAAGTTATCAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTT
CGACTAATCCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAG
GGCAGCGCCGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATA
TGCCCGCGATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGC
GTGCCCAGGCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAG
CGCCGTCGACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCA
CCAGGTGGAGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCC
GCGAGTACATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTG
AAAAAACGGGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCC
CCGCCTGCTGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCT
TTTGGGGTCAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCG
CTCACACGTCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAA
GCGTGCCTCCTCATCGACGGACCGACAAGATGGCTCGCGATCGGGAAATG
CCACGCCCGGCGGACACTTCAATAACTCAAGGCCCGGCAGCGCCATGTCC
ACATCGACAAACATGTCCACATCCGGGCTGGTGCCCAGGCGACCGGCAAC
GGCACCCCGGAAACCGAGGCCCGCCAGTATCGCCGGAACGGGCATGTCTC
TCGAGGAGATTAACAAACTCAAGAGGGATCAGAAGCCGCCCGTGAAGACG
ACAGCCGCCTCGCCATCCGCACAAACGACACCCAAACGAACTGCAAACCT
TATGTCCACCTCCCTGATCGTGACCTCCAGCTCATCGCGGCTGAGCAGCG
CCGAAAAGAAGACGCCTTCGAAGCGGGAACCTCCGGTACCCAAGGCAGCA
TCAGCTTCAAAGGCGCTGCCAAGTCGCACAGCCAGTTCCGAGCGCATCAG
TAGGCTTACCAAGGAACCGAAAACCAAGGATACCTCTGCAATGACTAGGT
CGATGATTGTCACCAGCAGCAGTACCTCCACCATCACAAAACCAGCTCCT
GCCCCGGTCGCACCCACATCCGCTCCAGTTCCCGAGCAGAACGGTGTGGC
CAAGGAGGTAGAGAAGACTACTGCAGATGAGCCAGTTCCTGAGGCTGAAG
TTCCTACCGAGGCTCCCGTTGTTGTTCCATCAGTGAGCAAGGCTGAGAAG
GAAGCATTGAACACGGAGAAAACGGAGGAAGGGGCGCGTCAGGAGGAGGA
GCAAATTTTAGCGGTGGAATCTGTGCCCGAAGCTTTGGTTACCTCAATTA
ATGTAGAGGAAAAATCGGATGAGGGCAATGAGAAGGAGGTTCCTAAGCCC
CAGGAGCAGGCTGCGCCCAAGAAACCATCGCGCAGCAAGGAGAACTCAGA
GGTGCGGGAACTGACCCCACCAGAGGGTGCTGATCTGATGACCGCTTCGA
TGATGGCCAAGAAGATCACGACCGAGGAGGAGGCCAAGGCCGCTTTGGCC
GAGAGACGACGCCTGGCCCGCGAGGAGGCCGAACGACAGGCGGAATTAGA
GCGCCAACGACTGGAGGCTGAACGCCTGGCAGAGATCAAAGCCCAAGAGG
AGGAGGCGGAGCGCCAACGCCTGTTCGAGGAGGAGTCCACTCGCCTGGCC
GAGGAACAGCGCCGCGGGGAGGAGGAGCGCCTGCGCAAGGCCATCGAGGA
AGCCCAACAGCGTGAGGAGGAGGAGAAACGCCGGCGCGAGGAGGAGGAGA
AACAGCGCGTGGAACGTGAGGAGGCCGAGAAGAAGGCCAAGGAGGAGGCA
GAGAAGCAGCGCGTCGAGGTGGCTGAGCGCCTTAAGCGGGAGGAGAAGGA
GCGCGAGGAACGCCGCAAGCGGGTGGAGGCCATCATGCTGCGCACCCGCA
AGGGAGGCGCTGCCACCACACCCTCCAAGGACGCTAACGACAAAGCAGCT
CCTGCCGCAACGGCTCCAGAGAATAATAGCAGCAGCAACAGCAGCGTCAC
CGGGAGCAGCAACAACTCGGCTGAGGGCTCGCCCAGCGCAGCAGATTCCA
CGCCAGCACCAACGGCAACGGAAACTGTCCAGGAGGCGCCAAACAGTCAG
GCGATGTACGAGCAATCGGTGCTAGACAAGGAGAACTCGCTCATCAATAG
CTTCTCCACGATGATCATCGATGAGAATGCCAAGAACCTGCAGCAGGTGA
GCAACGGCAAGTTGCTGGTGGACTTTGAGAGCACCAATACTGTGCCGGCG
GTGGCCAACGGCAATGGACACATCGAGAATGTCAACAACAAGAATGACAT
CAATCTGCTGCAGGACGTAGTCGCTCCGGTCGCCACCCAGCTGATTGACC
TGAGCATCGAGTCACAAGATCTACACCTGAACAATAACAACAGCTTGCTG
ACGAGCACAGCGGCAACCACCACGCTAGTCACTGCTGATAGTCACGAAAA
TAAAGATATATCGCTGCTGTGAAAGCTTTCTAGACCATTCGTTTGGCGCT
CAAGAGG
BS27376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RB | 2556 | CG14998-PB | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| ens-RH | 2547 | CG14998-PH | 1..2547 | 17..2572 | 12610 | 99.6 | Plus |
| ens-RC | 2502 | CG14998-PC | 47..2502 | 117..2572 | 12280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RB | 3887 | CG14998-RB | 49..2605 | 17..2573 | 12785 | 100 | Plus |
| ens-RH | 3878 | CG14998-RH | 49..2596 | 17..2573 | 12615 | 99.6 | Plus |
| ens-RC | 3833 | CG14998-RC | 95..2551 | 117..2573 | 12285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4125880..4126703 | 1799..976 | 4120 | 100 | Minus |
| 3L | 28110227 | 3L | 4125136..4125502 | 2394..2028 | 1835 | 100 | Minus |
| 3L | 28110227 | 3L | 4131955..4132214 | 377..118 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 4125577..4125810 | 2030..1797 | 1170 | 100 | Minus |
| 3L | 28110227 | 3L | 4126989..4127163 | 806..632 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 4126761..4126932 | 977..806 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 4124919..4125079 | 2555..2395 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 4131748..4131892 | 518..374 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4131120..4131238 | 633..515 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 4133769..4133824 | 119..64 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 4134454..4134502 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6827 | 2072..2169 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6856 | 2044..2177 | 183 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2392..2538 | 2036..2175 | 177 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2749..2877 | 2044..2172 | 176 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2421 | 2075..2175 | 174 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2485 | 2036..2176 | 173 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6869 | 2036..2175 | 172 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6893 | 2009..2175 | 166 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2515 | 2044..2176 | 158 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1151 | 2042..2116 | 156 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6980 | 2009..2228 | 153 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6823 | 2072..2177 | 152 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2823 | 2012..2523 | 147 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2394 | 2042..2116 | 147 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6920 | 2009..2116 | 147 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1142 | 2043..2116 | 142 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1130 | 2024..2116 | 124 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1572 | 2065..2116 | 120 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2882 | 2078..2204 | 116 | 57.8 | Plus |
BS27376.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:33 Download gff for
BS27376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RA | 49..152 | 17..120 | 100 | <- | Plus |
| ens-RA | 261..2715 | 121..2578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:25 Download gff for
BS27376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 49..2607 | 17..2578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:31 Download gff for
BS27376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 49..2607 | 17..2578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:31 Download gff for
BS27376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4124919..4125079 | 2395..2555 | 100 | <- | Minus |
| 3L | 4125136..4125500 | 2030..2394 | 100 | <- | Minus |
| 3L | 4125578..4125808 | 1799..2029 | 100 | <- | Minus |
| 3L | 4125881..4126702 | 977..1798 | 100 | <- | Minus |
| 3L | 4126762..4126931 | 807..976 | 100 | <- | Minus |
| 3L | 4126989..4127162 | 633..806 | 100 | <- | Minus |
| 3L | 4131121..4131236 | 517..632 | 100 | <- | Minus |
| 3L | 4131750..4131889 | 377..516 | 100 | <- | Minus |
| 3L | 4131956..4132212 | 120..376 | 100 | <- | Minus |
| 3L | 4133769..4133822 | 66..119 | 100 | <- | Minus |
| 3L | 4134454..4134502 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:25 Download gff for
BS27376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4131956..4132212 | 120..376 | 100 | <- | Minus |
| arm_3L | 4133769..4133822 | 66..119 | 100 | <- | Minus |
| arm_3L | 4134454..4134502 | 17..65 | 100 | | Minus |
| arm_3L | 4124919..4125079 | 2395..2555 | 100 | <- | Minus |
| arm_3L | 4125136..4125500 | 2030..2394 | 100 | <- | Minus |
| arm_3L | 4125578..4125808 | 1799..2029 | 100 | <- | Minus |
| arm_3L | 4125881..4126702 | 977..1798 | 100 | <- | Minus |
| arm_3L | 4126762..4126931 | 807..976 | 100 | <- | Minus |
| arm_3L | 4126989..4127162 | 633..806 | 100 | <- | Minus |
| arm_3L | 4131121..4131236 | 517..632 | 100 | <- | Minus |
| arm_3L | 4131750..4131889 | 377..516 | 100 | <- | Minus |
BS27376.pep Sequence
Translation from 16 to 2571
> BS27376.pep
MASLGGQHGNISTNPEVENTAKRPESREGSAERKASKDREEKLKYARDRQ
NEERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEER
KKAIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDV
PADYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSS
TDRQDGSRSGNATPGGHFNNSRPGSAMSTSTNMSTSGLVPRRPATAPRKP
RPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSL
IVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKE
PKTKDTSAMTRSMIVTSSSTSTITKPAPAPVAPTSAPVPEQNGVAKEVEK
TTADEPVPEAEVPTEAPVVVPSVSKAEKEALNTEKTEEGARQEEEQILAV
ESVPEALVTSINVEEKSDEGNEKEVPKPQEQAAPKKPSRSKENSEVRELT
PPEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLE
AERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQRE
EEEKRRREEEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERR
KRVEAIMLRTRKGGAATTPSKDANDKAAPAATAPENNSSSNSSVTGSSNN
SAEGSPSAADSTPAPTATETVQEAPNSQAMYEQSVLDKENSLINSFSTMI
IDENAKNLQQVSNGKLLVDFESTNTVPAVANGNGHIENVNNKNDINLLQD
VVAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISL
L*
BS27376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-PB | 851 | CG14998-PB | 1..851 | 1..851 | 4191 | 100 | Plus |
| ens-PH | 848 | CG14998-PH | 1..848 | 1..851 | 4164 | 99.6 | Plus |
| ens-PA | 887 | CG14998-PA | 1..887 | 1..851 | 4144 | 95.9 | Plus |
| ens-PL | 898 | CG14998-PL | 1..898 | 1..851 | 4133 | 94.8 | Plus |
| ens-PE | 898 | CG14998-PE | 1..898 | 1..851 | 4133 | 94.8 | Plus |
