BS27380.complete Sequence
1832 bp assembled on 2011-10-21
GenBank Submission: KX800959
> BS27380.complete
GAAGTTATCAGTCGACATGTTGGCAAATGAAACGAACAAGCTGCTGCTTT
CCTCGCAGCAGGAAAAACCAAATCACTACACCTACCTGAAGGAGTTCCGC
GTGGAGCAGTGCCAGTCGTTTTTACAGCACAAGTGCAACCAGCATCGCCC
CTTCGTCTGTTTCAATTGGCATTTTCAAAACCAGCGTCGGCGTCGTCCAG
TGCGAAAACGCGATGGCACCTTCAACTACAGTGCGGATAACTATTGCACC
AAATACGACGAGACCACTGGGATTTGTCCCGAGGGCGACGAATGCCCCTA
CTTACACCGCACTGCTGGCGACACCGAAAGGCGATACCATCTGCGCTACT
ACAAGACATGCATGTGCGTCCACGACACCGACAGCCGAGGATACTGCGTC
AAGAATGGACTACACTGCGCCTTCGCCCACGGCATGCAGGACCAGCGCCC
ACCGGTTTATGACATCAAAGAGCTGGAGACCCTGCAGAACGCAGAGAGCA
CACTGGACAGCACTAATGCTTTGAATGCCCTGGACAAGGAGCGCAATTTG
ATGAACGAGGATCCCAAGTGGCAGGACACCAACTACGTGCTGGCCAATTA
CAAGACAGAGCCCTGCAAGCGCCCACCGCGCCTGTGCCGCCAAGGATACG
CTTGTCCACAGTACCACAATAGCAAGGACAAACGTCGCTCGCCCAGAAAA
TACAAGTACAGGTCCACTCCTTGCCCCAATGTCAAGCACGGCGAGGAATG
GGGAGAACCGGGCAACTGCGAGGCCGGCGATAACTGCCAGTACTGCCACA
CACGCACCGAGCAGCAGTTCCACCCGGAGATCTACAAGTCGACCAAGTGC
AACGATGTCCAGCAGGCCGGATACTGTCCGCGCAGCGTCTTCTGCGCCTT
TGCCCATGTGGAACCTTGCTCAATGGACGATCCGCGCGAGAACTCATTGT
CGGCGAGTCTGGCCAATACTAGCTTATTAACACGTTCCTCGGCGCCAATT
AACATTCCTAATACGACTCTAAGTAACTCAATTAACGATTTTAACTCAGG
TAGCTTTGCCGTCAACATTCCCAGCAGCTCGCTCACCTACAGTCCCACCA
ACCATGCCAATCTCTTCAACGTGGACGCCTTCAACTATGGCGGCTCAAAC
AAACTCAGCAATTCCCTTTCGGCCACCCAGAACGATAGCAGTCTCTTCTT
TCCGTCGCGCATCATATCGCCTGGCTTTGGCGATGGCTTGTCGATTAGTC
CTTCGGTAAGGATATCCGAATTGAATACCATACGCGACGACATCAACAGC
AGCTCGGTGGGAAATAGTCTGTTCGAGAACACTCTCAATACGGCCAAGAA
TGCGTTTAGCCTTCAATCTCTGCAGTCGCAAAACAACAGCGACTTGGGTC
GCATCACCAATGAGCTGCTCACGAAGAATGCTCAAATTCACAAGTTGAAC
GGACGTTTCGAGGACATGGCATGCAAGCTAAAGATCGCGGAGCTCCATCG
GGACAAGGCCAAGCAGGAGGCGCAGGAGTGGAAGGAGCGCTATGACCTAG
CACAGATACAGCTAAATTTGCCAGCAGAGCTTCGGGACTTGTCCATACAG
AAATTGAAGCAATTGCAGTCCAAGCTGCGCACCGACTTGGAGGAGGTCGA
CAAAGTATTATATTTAGAAAATGCCAAGAAGTGCATGAAGTGCGAGGAGA
ACAATCGCACGGTTACTCTGGAGCCGTGCAACCACCTGTCTATTTGCAAT
ACATGCGCTGAATCGGTCACCGAGTGTCCCTACTGTCAGGTGCCGGTAAT
AACCACCCACACCTAGAAGCTTTCTAGACCAT
BS27380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unk-RE | 1800 | CG4620-PE | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| unk-RC | 1800 | CG4620-PC | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| unk-RB | 1800 | CG4620-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unk-RE | 5518 | CG4620-RE | 20..1821 | 17..1818 | 9010 | 100 | Plus |
| unk-RC | 3667 | CG4620-RC | 20..1821 | 17..1818 | 9010 | 100 | Plus |
| unk-RB | 2717 | CG4620-RB | 20..1821 | 17..1818 | 9010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23154194..23154775 | 1618..1037 | 2910 | 100 | Minus |
| 3R | 32079331 | 3R | 23156072..23156493 | 713..292 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 23157501..23157710 | 291..82 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 23155809..23156013 | 914..710 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 23153938..23154139 | 1818..1617 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 23154845..23154967 | 1037..915 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 23157779..23157843 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:26:16 has no hits.
BS27380.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:11:09 Download gff for
BS27380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 33..1827 | 22..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:01 Download gff for
BS27380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 25..1819 | 22..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:00 Download gff for
BS27380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 25..1819 | 22..1816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:00 Download gff for
BS27380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23157501..23157710 | 82..291 | 100 | <- | Minus |
| 3R | 23157779..23157838 | 22..81 | 100 | | Minus |
| 3R | 23154845..23154967 | 915..1037 | 100 | <- | Minus |
| 3R | 23155809..23156011 | 712..914 | 100 | <- | Minus |
| 3R | 23156074..23156493 | 292..711 | 100 | <- | Minus |
| 3R | 23153940..23154137 | 1619..1816 | 100 | <- | Minus |
| 3R | 23154194..23154774 | 1038..1618 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:01 Download gff for
BS27380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18981531..18981733 | 712..914 | 100 | <- | Minus |
| arm_3R | 18979662..18979859 | 1619..1816 | 100 | <- | Minus |
| arm_3R | 18979916..18980496 | 1038..1618 | 100 | <- | Minus |
| arm_3R | 18980567..18980689 | 915..1037 | 100 | <- | Minus |
| arm_3R | 18981796..18982215 | 292..711 | 100 | <- | Minus |
| arm_3R | 18983223..18983432 | 82..291 | 100 | <- | Minus |
| arm_3R | 18983501..18983560 | 22..81 | 100 | | Minus |
BS27380.pep Sequence
Translation from 16 to 1815
> BS27380.pep
MLANETNKLLLSSQQEKPNHYTYLKEFRVEQCQSFLQHKCNQHRPFVCFN
WHFQNQRRRRPVRKRDGTFNYSADNYCTKYDETTGICPEGDECPYLHRTA
GDTERRYHLRYYKTCMCVHDTDSRGYCVKNGLHCAFAHGMQDQRPPVYDI
KELETLQNAESTLDSTNALNALDKERNLMNEDPKWQDTNYVLANYKTEPC
KRPPRLCRQGYACPQYHNSKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGN
CEAGDNCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRSVFCAFAHVEP
CSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFNSGSFAVN
IPSSSLTYSPTNHANLFNVDAFNYGGSNKLSNSLSATQNDSSLFFPSRII
SPGFGDGLSISPSVRISELNTIRDDINSSSVGNSLFENTLNTAKNAFSLQ
SLQSQNNSDLGRITNELLTKNAQIHKLNGRFEDMACKLKIAELHRDKAKQ
EAQEWKERYDLAQIQLNLPAELRDLSIQKLKQLQSKLRTDLEEVDKVLYL
ENAKKCMKCEENNRTVTLEPCNHLSICNTCAESVTECPYCQVPVITTHT*
BS27380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unk-PE | 599 | CG4620-PE | 1..599 | 1..599 | 3254 | 100 | Plus |
| unk-PC | 599 | CG4620-PC | 1..599 | 1..599 | 3254 | 100 | Plus |
| unk-PB | 599 | CG4620-PB | 1..599 | 1..599 | 3254 | 100 | Plus |
| unk-PA | 599 | CG4620-PA | 1..599 | 1..599 | 3254 | 100 | Plus |
| unk-PF | 600 | CG4620-PF | 1..600 | 1..599 | 3242 | 99.8 | Plus |
