BS27381.complete Sequence
1757 bp assembled on 2013-09-16
GenBank Submission: KX806349
> BS27381.complete
GAAGTTATCAGTCGACATGGACTATACACGTGAAATTTTGACCTTCCAGT
TCGGAACGTACGCGAATTACGTGGGCACACACTTCTGGAACCAGCAGGAG
GCCAACTTTAGGTACGGAGACGAAAGCGAACAGGTGGCCGAGGAGCAGCT
GCCCAACAATGATATTTTGTACCGTGAAGGGCGCAACGACCTCAATCGTA
CCACCTACACGCCCCGCCTGCTGTCCGTGGATTTGTCCGGGACCCTGGGA
CATCTGCCGGTGACCGGCGAGCTGTACGGCAATTTTGTGCAGCGTGATGA
GGAGTTGCTGCCCCTGAGCACCGGAGAGGAATTGGAACAGGTTCGCAAGC
GGGCAGAGGAGAGCGGCGTATGCTCACCGGAGCAGCTGGAAGTGCAGGAG
CAGTCGAAGGCCTCCATTTCCGAATATCAGCGGGATCTGCTCAAGAATGC
TGTGGTGCCCGAGAAGAACTATCAGCTGGCAGCGACGGCAAACAGTTGGG
TGGACTTCCTTTACGCCAGGTATCACCCGAGAACCTTGAATGTCTTGCCG
GGGCTGATCCGAGATCCGACTGCCCAAGCCCTGGGTACCTACTCTGCCGG
AACAGAAATGTGGCAGGAAGTCTCCTTCAACGAGGAGTTCTGCGATCGTA
TCCGTTTGTATGTAGAGGAGTGCGATGGCCTGCAGGGCTTCCACGTGCTG
TTCGACATTGACGATGGCTTCGGCGGACTGGCTGGGAAGTGCCTGGAGCA
CCTCAACGATGAGTACAGCCGGGCGAGTTTCGCGCTGCCACTTCACTATC
CCAGGATCACTAGTTATCCCCAAGCGGATACCCGCCTGTCGCACAGCATT
CGGGTGGTAAACAATGTGTTGGGCTACCACCAACTCAGCGAGCAGGCTTT
GATGTTCACGCCGCTATCCACGCTGGAGACCATCTGGCGAAACAATAATC
TGAAGTCGCGCAGTCTGCCGGGACTCCAGTGGGAGACGGATAACCTCTAC
CAGACATCAGCGCTGCTGGCCGCCTTTTTCGACACGGCCACCTTGAGTTA
CCGCCTGCGGCAAACGCCAGAATCTTTGCTACGCTTTTGCGAATGCGTCA
CTCCAGCGGGCAGAAAGATGACCGCCGCTGGATTGGCTCTGCCATTTGGG
CTGAGGGAGGGTCAGGATCTGATAGAGTTTCTAGACCAGAGTGGCGACCA
CGCGCTGCTCACACAACTCACACCGGGCTGTGAGCCTGGCACATCCTACG
TGGTGCAATCAGTGACGGCTCGTGGCATTCCCGCGGAACGTTTGAAACGG
CCCAGGGAGCTGGCCGGCGATCAACTTCGGATGGCTGCCTATAGCTGCGA
TAGTATATCCCATATGCTGCAGCTATACTACCAGTGCACCTATCATGGAA
GTGTTACAAATGCGGCAGCCACACCACTGCCACTAAAGACACAGCTACCT
TTTCCTTATGAAATGTTTGCAGCCGGTATATCACGCGATGGCTACCGCTT
GCCTGAGGGGGCGGAACGCGAGACGGGTAGTCGTGTGGATTCGGCACCCA
TGCTGGCCGCCGTACAGAACTCCACCAAGCTGGGCGAGCATCTGGACAAT
GTGCACGCCCAATCGCATCGAGTGCAGCTGGCCAAGTTGCAAGCGTACTC
TAATTCTGGATTGGAGCGGGATGAGTACGATACGGCGCTGGATCAGCTGC
TTGAGTTCCGCGACCTTTACGCAGACTCGCAGTATCTATAGAAGCTTTCT
AGACCAT
BS27381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mst-RB | 1725 | CG1424-PB | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| mst-RA | 1725 | CG1424-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mst-RB | 2443 | CG1424-RB | 36..1760 | 17..1741 | 8625 | 100 | Plus |
| mst-RA | 1893 | CG1424-RA | 36..1760 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21389936..21390850 | 827..1741 | 4575 | 100 | Plus |
| X | 23542271 | X | 21389145..21389877 | 95..827 | 3665 | 100 | Plus |
| X | 23542271 | X | 21389012..21389093 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:05:46 has no hits.
BS27381.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:52 Download gff for
BS27381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mst-RA | 36..1760 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:09 Download gff for
BS27381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mst-RA | 36..1760 | 17..1741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:09 Download gff for
BS27381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21389012..21389092 | 17..97 | 100 | -> | Plus |
| X | 21389148..21389877 | 98..827 | 100 | -> | Plus |
| X | 21389937..21390850 | 828..1741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:52 Download gff for
BS27381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21260039..21260119 | 17..97 | 100 | -> | Plus |
| arm_X | 21260175..21260904 | 98..827 | 100 | -> | Plus |
| arm_X | 21260964..21261877 | 828..1741 | 100 | | Plus |
BS27381.pep Sequence
Translation from 16 to 1740
> BS27381.pep
MDYTREILTFQFGTYANYVGTHFWNQQEANFRYGDESEQVAEEQLPNNDI
LYREGRNDLNRTTYTPRLLSVDLSGTLGHLPVTGELYGNFVQRDEELLPL
STGEELEQVRKRAEESGVCSPEQLEVQEQSKASISEYQRDLLKNAVVPEK
NYQLAATANSWVDFLYARYHPRTLNVLPGLIRDPTAQALGTYSAGTEMWQ
EVSFNEEFCDRIRLYVEECDGLQGFHVLFDIDDGFGGLAGKCLEHLNDEY
SRASFALPLHYPRITSYPQADTRLSHSIRVVNNVLGYHQLSEQALMFTPL
STLETIWRNNNLKSRSLPGLQWETDNLYQTSALLAAFFDTATLSYRLRQT
PESLLRFCECVTPAGRKMTAAGLALPFGLREGQDLIEFLDQSGDHALLTQ
LTPGCEPGTSYVVQSVTARGIPAERLKRPRELAGDQLRMAAYSCDSISHM
LQLYYQCTYHGSVTNAAATPLPLKTQLPFPYEMFAAGISRDGYRLPEGAE
RETGSRVDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLE
RDEYDTALDQLLEFRDLYADSQYL*
BS27381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mst-PB | 574 | CG1424-PB | 1..574 | 1..574 | 3005 | 100 | Plus |
| mst-PA | 574 | CG1424-PA | 1..574 | 1..574 | 3005 | 100 | Plus |
