BS27386.complete Sequence
1799 bp assembled on 2011-10-14
GenBank Submission: KX802969
> BS27386.complete
GAAGTTATCAGTCGACATGGAGCTTTTGTCGCTGCTAACACTTCTGCTAT
TAGCCATTGCCTCGAATGAGGCATGTCAAGTGCAGAGCTCGTCCAGTGAA
ACGACCAAGGACTGGTGGCAAACCGCCCAGTTCTATCAGATCTACCCGCG
CTCCTTCAAAGACTCCGATGGCGATGGCATTGGTGATTTGAACGGCATAA
CCAGCAAACTGGAGTATCTCAAGGACTTGGGCGTAACGGCTGCTTGGCTA
TCGCCTATCTTCAAGTCGCCCATGGTCGACTTTGGCTATGACATATCCGA
TTTTTTTGACATTCAACCGGAGTACGGAACACTCGAGGATTTTCGTACAT
TGATCAAGCGAGCCAAGGAGCTGGATCTAAAGATCGTCCTGGACTTCGTA
CCCAACCATTCAAGCAACGAGAGTGAGTGGTTCCTGAAGTCGGTTAAAAG
AGAGAAGGGCTACGAGGACTACTACGTGTGGCACGACGGGAAGGTAAATT
CCACCACTGGGAAGAGGGAGCCTCCGACCAACTGGCTACAATACTTCCGT
GGAAGTGCCTGGGAGTGGAACGAGGTGCGTCAGCAGTACTACCTACACCA
GTTCGCAGTGCAACAGCCAGATCTGAACTATCGCAATCCTCTGGTTGTGG
AGCAGATGAAGCGGGTGCTGCGCTACTGGCTGAACGAGGGCGTCTCTGGA
TTCCGGTGCGATGCACTGCCTCCGCTTTTTGAGGTCGTGCCCGATAGCGA
CGGTCAATTTCCGGATGAGGTTGTGAGTGGGGCCACCGAGGACAAAGAGG
ATCGCGACTATCTGACCACCACGTACATCGAAAATCAGCCAGAGACTATA
GATATGGTTTATCAGTGGCGTACTGTACTTGATGACCACAAACGCATTTT
CGGGGGCAACTCGAGTGTCTTGCTGATAGAGACGTACTCCCCCGCCTGGT
TTACCATGCAGTTCTACGGGAATAGAAGCACAGAGGGAGCCCACTTACCC
TTCAACTTCAACTTGATCACAGTTATGGAGCAAAGCGGTCTTTCTGCGAG
CAACGTGCAGGAGGCAATCGATTTGTGGCTAAAGAACATGCCCGCAGGTC
GCACACCCAATTGGGTGCTAGGAAATCACGACAAACGAAGAGCAGCCAGT
CGGTATGGAAAAGAAAACATCGATGGCATGAACATGCTGGTGATGATTCT
GCCGGGAGTCAGTGTCACCTACCAGGGCGAGGAGATCGGCATGACTGATG
GGGAGATCAGCTGGGAGGACACTGTTGATCCGTGGGGTTGCAACTCGAAT
CCGAACATCTACGAACAGTACACCCGCGATCCAGAGAGGACACCATTCCA
GTGGACTGGAGGCACTAATGCCGGTTTTACGAATGGATCCTCCACCTGGT
TGCCACTGGCTGCTGACTATGCAACGATAAATGTTGAGAAGGAATTAAGC
GATGATCACTCACACTTGAAGATATACAAGGCACTGGTGGCACTACGGAA
ATCTTCTAAAACTCTGCAAAATGGGTCCACAAAGTACCAGGCACTTTCTG
AGGACATCTTCGTAGTCCAACGATCTCTGACCAAATCGGCCACCATTGTA
CTTGTCATTAACTTCGGATCGGTAGCTAAAACCGTTGACTTGAGTCAGTT
TGACAAGAGCCGTACCGAAAGCCTGCAGCTGCTCATAAGAAGCATTGATT
CCACAAAGAAGGAGGGCACTCGGTACGATCCGAAAGCCTTGAGCCTGGAT
CCCTCGGAAGCCTTAGTCTTAACCACCGAATAAAAGCTTTCTAGACCAT
BS27386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A8-RA | 1767 | CG8690-PA | 1..1767 | 17..1783 | 8835 | 100 | Plus |
| Mal-A7-RB | 1800 | CG11669-PB | 106..744 | 107..745 | 1320 | 80.4 | Plus |
| Mal-A7-RA | 1800 | CG11669-PA | 106..744 | 107..745 | 1320 | 80.4 | Plus |
| Mal-A7-RB | 1800 | CG11669-PB | 1084..1418 | 1085..1419 | 430 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A8-RA | 1814 | CG8690-RA | 30..1798 | 17..1785 | 8845 | 100 | Plus |
| Mal-A7-RB | 2717 | CG11669-RB | 120..758 | 107..745 | 1320 | 80.4 | Plus |
| Mal-A7-RA | 1925 | CG11669-RA | 120..758 | 107..745 | 1320 | 80.4 | Plus |
| Mal-A7-RB | 2717 | CG11669-RB | 1098..1432 | 1085..1419 | 430 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8471983..8473083 | 17..1117 | 5505 | 100 | Plus |
| 2R | 25286936 | 2R | 8473140..8473595 | 1117..1572 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 8470906..8471544 | 745..107 | 1320 | 80.4 | Minus |
| 2R | 25286936 | 2R | 8465296..8465862 | 113..679 | 735 | 75.3 | Plus |
| 2R | 25286936 | 2R | 8473655..8473799 | 1572..1716 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 8451295..8451801 | 639..133 | 495 | 73.2 | Minus |
| 2R | 25286936 | 2R | 8470232..8470566 | 1419..1085 | 430 | 75.2 | Minus |
| 2R | 25286936 | 2R | 8473876..8473945 | 1716..1785 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 8464226..8464385 | 1199..1358 | 320 | 80 | Plus |
| 2R | 25286936 | 2R | 8458892..8459083 | 112..303 | 240 | 75 | Plus |
| 2R | 25286936 | 2R | 8453751..8454100 | 137..486 | 235 | 71.1 | Plus |
| 2R | 25286936 | 2R | 8466451..8466628 | 1178..1355 | 215 | 74.7 | Plus |
| 2R | 25286936 | 2R | 8456578..8456651 | 1272..1199 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:24:12 has no hits.
BS27386.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:48:37 Download gff for
BS27386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8690-RA | 1..1765 | 17..1781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:05 Download gff for
BS27386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 30..1794 | 17..1781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:14 Download gff for
BS27386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 30..1794 | 17..1781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:14 Download gff for
BS27386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8471983..8473083 | 17..1117 | 100 | -> | Plus |
| 2R | 8473141..8473595 | 1118..1572 | 100 | -> | Plus |
| 2R | 8473656..8473799 | 1573..1716 | 100 | -> | Plus |
| 2R | 8473877..8473941 | 1717..1781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:05 Download gff for
BS27386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4359488..4360588 | 17..1117 | 100 | -> | Plus |
| arm_2R | 4360646..4361100 | 1118..1572 | 100 | -> | Plus |
| arm_2R | 4361161..4361304 | 1573..1716 | 100 | -> | Plus |
| arm_2R | 4361382..4361446 | 1717..1781 | 100 | | Plus |
BS27386.pep Sequence
Translation from 16 to 1782
> BS27386.pep
MELLSLLTLLLLAIASNEACQVQSSSSETTKDWWQTAQFYQIYPRSFKDS
DGDGIGDLNGITSKLEYLKDLGVTAAWLSPIFKSPMVDFGYDISDFFDIQ
PEYGTLEDFRTLIKRAKELDLKIVLDFVPNHSSNESEWFLKSVKREKGYE
DYYVWHDGKVNSTTGKREPPTNWLQYFRGSAWEWNEVRQQYYLHQFAVQQ
PDLNYRNPLVVEQMKRVLRYWLNEGVSGFRCDALPPLFEVVPDSDGQFPD
EVVSGATEDKEDRDYLTTTYIENQPETIDMVYQWRTVLDDHKRIFGGNSS
VLLIETYSPAWFTMQFYGNRSTEGAHLPFNFNLITVMEQSGLSASNVQEA
IDLWLKNMPAGRTPNWVLGNHDKRRAASRYGKENIDGMNMLVMILPGVSV
TYQGEEIGMTDGEISWEDTVDPWGCNSNPNIYEQYTRDPERTPFQWTGGT
NAGFTNGSSTWLPLAADYATINVEKELSDDHSHLKIYKALVALRKSSKTL
QNGSTKYQALSEDIFVVQRSLTKSATIVLVINFGSVAKTVDLSQFDKSRT
ESLQLLIRSIDSTKKEGTRYDPKALSLDPSEALVLTTE*
BS27386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A8-PA | 588 | CG8690-PA | 1..588 | 1..588 | 3113 | 100 | Plus |
| Mal-A7-PB | 599 | CG11669-PB | 16..592 | 12..587 | 2260 | 72.1 | Plus |
| Mal-A7-PA | 599 | CG11669-PA | 16..592 | 12..587 | 2260 | 72.1 | Plus |
| Mal-A6-PC | 601 | CG30360-PC | 34..598 | 24..585 | 1813 | 59.1 | Plus |
| Mal-A6-PD | 601 | CG30360-PD | 34..598 | 24..585 | 1813 | 59.1 | Plus |
